SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56042

Length: 292 nt

UniGene Fasta

>sp_v2.0_unigene56042
ATGGGAGTTCAAAGAGGGAGGGTTGTTGTCTGCGCTGCCGGAAATGCTGGTCCAGTTCGGGCGACGGTTTCAAATGTATCACCTTGGATCATAACTGTGGGAGCAAGCACCATCGACAGAGGATACCCTTCGACCGTTTATCTCGGAAACAACAGATCATATATAGGACAAAGCCTATCCCAGTTCCGATTACCAAAAAAGAAAACTGTATCCACTGGTATCATCAGTGAGGGTGAAAGCTCCACATGCAAATAGAACTGCTGGAGAACACTGTCTCGCGGGATCGTTAGAT

Ace file of the UniGene sp_v2.0_unigene56042

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xylem serine proteinase 1, putative n=1 Tax=Ricinus communis RepID=B9SF18_RICCO	-	-	7.0e-19	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	subtilisin-like protease	-	-	8.50786e-19	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	8.50786e-19	75%
Blast2go	lateral root morphogenesis	GO:0010102	Biological Process	8.50786e-19	75%

Source	InterPros	Term	Type	Identity
Sma3	Phosphofructokinase domain	IPR000023	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-
Sma3	Proteinase inhibitor I9	IPR010259	-	-
Sma3	Peptidase S8, subtilisin-related	IPR015500	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 358 aas, your sequence is shorter than subject: 85 - 766

Fln protein: MGVQRGRVVVCAAGNAGPVRATVSNVSPWIITVGASTIDRGYPSTVYLGNNRSYIGQSLSQFRLPKKKTVSTGIISEGESSTCK*

Protein Length: 86

Fln nts: ATGGGAGTTCAAAGAGGGAGGGTTGTTGTCTGCGCTGCCGGAAATGCTGGTCCAGTTCGGGCGACGGTTTCAAATGTATCACCTTGGATCATAACTGTGGGAGCAAGCACCATCGACAGAGGATACCCTTCGACCGTTTATCTCGGAAACAACAGATCATATATAGGACAAAGCCTATCCCAGTTCCGATTACCAAAAAAGAAAACTGTATCCACTGGTATCATCAGTGAGGGTGAAAGCTCCACATGCAAATAGAACTGCTGGAGAACACTGTCTCGCGGGATCGTTAGAT

Fln Alignment:

AllPineV4_c56112___VQRGRVVVCAAGNAGPVRATVSNVSPWIITVGASTIDRGYPSTVYLGNNRSYIGQSLSQFRLPKKKTVSTG
C0PQV9_______________IEKGVFVSCAAGNAGPIPSKIFNTAPWITTVGASTIDREFPAPVVLGNGKNYRGSSLY-----KGKTLGNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain