SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56039

Length: 434 nt

UniGene Fasta

>sp_v2.0_unigene56039
GTAGTATCAGCTTTCCGCATATTCTCAATTGATCCCCCAGATGCAAAGGATCTAGATGATGCATTGTCAATTGAAAACATAGGGAATGGTGTCATGAGAGTGGGAGTCCATATTGCAGATGTTTCCTACTTTGTCCATCCCGAGACTATGTTGGATAGAGAGGCACAAGACCGTTCTACAAGTATCTATCTTATCCAGCGTATGCTACCAATGCTGCCTCGCATTCTTTGTGAAGAGTTGTGCTCATTGAACCCAGGAGTTGATAGACTAGCTTTCTCGGTTATGTGGGATATTAATCCTTCAGGTGATGTTCTGGATCACTGGATTGGGCGAACAATAATTCGTTCATGCTGCAAGCTTTCCTATCAACATGCACAGGAGATTATAGATGGCATACTTGACTGCAGTAAAACTATGGCAGTGAAATGTGCTAC

Ace file of the UniGene sp_v2.0_unigene56039

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative 3'-5' exoribonuclease, 3' partial; 3320-1 [Arabidopsis thaliana]	-	-	2.0e-38	65%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	71%
Blast2go	dis3-like exonuclease	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease II/R	IPR001900	-	-
Sma3	Protein of unknown function DUF167	IPR003746	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide binding protein, PINc	IPR006596	-	-
Sma3		IPR018115	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SWE2

Fln msg: Distance to subject end: 405 aas, your sequence is shorter than subject: 144 - 863

Fln protein: VVSAFRIFSIDPPDAKDLDDALSIENIGNGVMRVGVHIADVSYFVHPETMLDREAQDRSTSIYLIQRMLPMLPRILCEELCSLNPGVDRLAFSVMWDINPSGDVLDHWIGRTIIRSCCKLSYQHAQEIIDGILDCSKTMAVKCA

Protein Length: 145

Fln nts: GTAGTATCAGCTTTCCGCATATTCTCAATTGATCCCCCAGATGCAAAGGATCTAGATGATGCATTGTCAATTGAAAACATAGGGAATGGTGTCATGAGAGTGGGAGTCCATATTGCAGATGTTTCCTACTTTGTCCATCCCGAGACTATGTTGGATAGAGAGGCACAAGACCGTTCTACAAGTATCTATCTTATCCAGCGTATGCTACCAATGCTGCCTCGCATTCTTTGTGAAGAGTTGTGCTCATTGAACCCAGGAGTTGATAGACTAGCTTTCTCGGTTATGTGGGATATTAATCCTTCAGGTGATGTTCTGGATCACTGGATTGGGCGAACAATAATTCGTTCATGCTGCAAGCTTTCCTATCAACATGCACAGGAGATTATAGATGGCATACTTGACTGCAGTAAAACTATGGCAGTGAAATGTGCTAC

Fln Alignment:

AllPineV4_c56108___RIFSIXXXXXXXXXXXXSIENIGNGVMRVGVHIADVSYFVHPETMLDREAQDRSTSIYLIQRMLPMLPRILCEELCSLNPGVDRLAFSVMWDINPSGDVLDHWIGRTIIRSCCKLSYQHAQEIIDG
D8SWE2_______________RVFTIDPVTARDLDDALSVEHLGDGLTRVGVHIADVSYFVHAGSGLDKEAQQRSTSVYLIEQVLPMLPRLLCEELCSLQPGVDRLAFSVMWDLDSTGQIVKQWIGRTAIKSCCKLSYGDAQEIIDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain