SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56021

Length: 459 nt

UniGene Fasta

>sp_v2.0_unigene56021
ATGGGGCAACCAGAAGAATTTGATCTAACAAAAGAAAAGACTTAGTCTGTAAGTTGAAAAAGGCATTATATGGGTTGAAACAAGCTACCAGAGCTTGGTATGCAAGATTGGATCACTATCTACAACAACAAGGCTTCAAGAAGGGAGTGGCAGGGAGTAATCTTTACATAAAGACGGATGAAGGTAAGTTACTAGTCACACTTGTTTATGTTGATGATCTGATTTTTGCTAGCAATAATGATGAGATGAGCAATGAATTTTCTCAAAACATGTCAAAAGAGTTCGAGATGTCGATGATAGGAGAGTTATCTCACTTCCTTGGACTACAAGCATCTCAGACCAGAGTAGGATTGTTTATATCTCAGGCCAAATATCTTAAAGACATGCTTAAAAGATATGGAATGGAAGACTGTGCATCCATGAGCACACCTACGACCACAAATTGCAAATTGAGCAAAC

Ace file of the UniGene sp_v2.0_unigene56021

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-pol polyprotein n=7 Tax=Glycine max RepID=Q84VH6_SOYBN	-	-	2.0e-35	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	gag-pol polyprotein	-	-	8.82818e-44	70%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Saposin-like type B, 1	IPR007856	-	-
Sma3	Saposin-like type B, 2	IPR008138	-	-
Sma3	Saposin B	IPR008139	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3		IPR010256	-	-
Sma3	Saposin-like	IPR011001	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 103 aas, your sequence is shorter than subject: 152 - 363

Fln protein: GATRRI*SNKRKDLVCKLKKALYGLKQATRAWYARLDHYLQQQGFKKGVAGSNLYIKTDEGKLLVTLVYVDDLIFASNNDEMSNEFSQNMSKEFEMSMIGELSHFLGLQASQTRVGLFISQAKYLKDMLKRYGMEDCASMSTPTTTNCKLSK

Protein Length: 153

Fln nts: ATGGGGCAACCAGAAGAATTTGATCTAACAAAAGAAAAGACTTAGTCTGTAAGTTGAAAAAGGCATTATATGGGTTGAAACAAGCTACCAGAGCTTGGTATGCAAGATTGGATCACTATCTACAACAACAAGGCTTCAAGAAGGGAGTGGCAGGGAGTAATCTTTACATAAAGACGGATGAAGGTAAGTTACTAGTCACACTTGTTTATGTTGATGATCTGATTTTTGCTAGCAATAATGATGAGATGAGCAATGAATTTTCTCAAAACATGTCAAAAGAGTTCGAGATGTCGATGATAGGAGAGTTATCTCACTTCCTTGGACTACAAGCATCTCAGACCAGAGTAGGATTGTTTATATCTCAGGCCAAATATCTTAAAGACATGCTTAAAAGATATGGAATGGAAGACTGTGCATCCATGAGCACACCTACGACCACAAATTGCAAATTGAGCAAAC

Fln Alignment:

AllPineV4_c56089___RKDLVCKLKKALYGLKQATRAWYARLDHYLQQQGFKKGVAGSNLYIKTDE-GKLLVTLVYVDDLIFASNNDEMSNEFSQNMSKEFEMSMIGELSHFLGLQASQTRVGLFISQAKYLKDMLKRYGMEDCASMSTPTTTNCKLSK
B8LKV8_______________QEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLYTKVNEQGQILIVCLYVDDLIYTGNLT--IDMFKSAMKKEFEMTDLGLMNYFLGIEVTQKDKGIFICQSKYARDVLKRFRMINCSPVSTPVGVGTKLSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain