SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene56002

Length: 241 nt

UniGene Fasta

>sp_v2.0_unigene56002
CCGCTATAGAAGAAAAATGGCACCAGATGTGACATTACGTCAGTGGCGAAAAGGGTCACAGTGGTTTGAGATTCATCGTAAGCTGGCAATTAACATAATTTCTGACACCAAGTATTACGCAATATTCAAGGCATTTTGCACACCATCTTGTTATGTTGATGAGCATTACCTTCCAACTATTTTGAATATGAAGTTTGGATCTCTAAATTCTAACAGAAGTATTACATGGTTGACTGGCCAA

Ace file of the UniGene sp_v2.0_unigene56002

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] gb\|AAD32878.1\|AC005489_16 F14N23.16 [Arabidopsis thaliana] gb\|ABK32109.1\| At1g10280 [Arabidopsis thaliana] gb\|AEE28561.1\| Core-2/I-branching beta-1,6-N-acety	-	-	4.0e-28	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein	-	-	2.16054e-40	81%

Source	InterPros	Term	Type	Identity
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Polymerase/histidinol phosphatase, N-terminal	IPR003141	-	-
Sma3	Adaptor protein ClpS, core	IPR003769	-	-
Sma3	PHP, C-terminal	IPR004013	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	Nucleic acid binding, OB-fold, tRNA/helicase-type	IPR004365	-	-
Sma3	DNA polymerase III, alpha subunit	IPR004805	-	-
Sma3		IPR004949	-	-
Sma3	ATPase, AFG1-like	IPR005654	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	ATP-dependent helicase, C-terminal	IPR006555	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Bacterial DNA polymerase III, alpha subunit	IPR011708	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type	IPR014013	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB94

Fln msg: Distance to subject end: 63 aas, your sequence is shorter than subject: 80 - 345

Fln protein: RYRRKMAPDVTLRQWRKGSQWFEIHRKLAINIISDTKYYAIFKAFCTPSCYVDEHYLPTILNMKFGSLNSNRSITWLTGQ

Protein Length: 81

Fln nts: CCGCTATAGAAGAAAAATGGCACCAGATGTGACATTACGTCAGTGGCGAAAAGGGTCACAGTGGTTTGAGATTCATCGTAAGCTGGCAATTAACATAATTTCTGACACCAAGTATTACGCAATATTCAAGGCATTTTGCACACCATCTTGTTATGTTGATGAGCATTACCTTCCAACTATTTTGAATATGAAGTTTGGATCTCTAAATTCTAACAGAAGTATTACATGGTTGACTGGCCAA

Fln Alignment:

AllPineV4_c56068___RYRRKMAPDVTLRQWRKGSQWFEIHRKLAINIISDTKYYAIFKAFCTPSCYVDEHYLPTILNMKFGSLNSNRSITWL
D5AB94_______________RYNIKMAPEVTLSQWRKGSQWFEVHRKLAIDIISDTKYYQIFKAFCKPSCYIDEHYIPTILSMQFGSLISNRSITWV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain