SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55983

Length: 205 nt

UniGene Fasta

>sp_v2.0_unigene55983
GGTATTAAGTGGTTTGTGCGGTGGAGAAAAATTTGCTGGCAGTGGGAAGATTGATGGCTGCAATGGAAGCTGTTGGAAAACCACCTAGCAGGAAAACATTGTCATGGTTGGTGCATGGTTATGTGAAGGGTGGACATTTTGAGGAGGCTGCAAAGACGCTCATTAAGATGCTCGACAAAGGGCTGTACCCTGAAAAGATGGAAAT

Ace file of the UniGene sp_v2.0_unigene55983

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	pentatricopeptide repeat-containing protein chloroplastic-like	-	-	6.16111e-39	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXA0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 51 aas, your sequence is shorter than subject: 67 - 515

Fln protein: Y*VVCAVEKNLLAVGRLMAAMEAVGKPPSRKTLSWLVHGYVKGGHFEEAAKTLIKMLDKGLYPEKME

Protein Length: 68

Fln nts: GGTATTAAGTGGTTTGTGCGGTGGAGAAAAATTTGCTGGCAGTGGGAAGATTGATGGCTGCAATGGAAGCTGTTGGAAAACCACCTAGCAGGAAAACATTGTCATGGTTGGTGCATGGTTATGTGAAGGGTGGACATTTTGAGGAGGCTGCAAAGACGCTCATTAAGATGCTCGACAAAGGGCTGTACCCTGAAAAGATGGAAAT

Fln Alignment:

AllPineV4_c56040___VCAVEKNLLAVGRLMAAMEAVGKPPSRKTLSWLVHGYVKGGHFEEAAKTLIKMLDKGLYPEKME
A9NXA0_______________VCAVEKNLLAVGRLMAGMEAVGKPPSKKTFSWLVHGYVKGEHFEEAAKTLIKMLDKGLYPEKLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain