SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55976

Length: 267 nt

UniGene Fasta

>sp_v2.0_unigene55976
GCCTGCAGAAATTGGTAATCTGGAAAATGTAAAGAATTTGTATTTAACTTCTTGCTCCCTCTGGGGGCCCATTCCCGATGAGATATCTAATATGCTGTCCCTCAGTAAGCTAGACCTTTCCAACAATCCATTACGGTCCCCTATTCCTGAAGCCATTGGAAATCTGAGCAATCTCACTATTTTAAATATGGTGAACTCAGAACTCAATGGAACAATCCCTTCTGAATTGGGCAAATGCAGAAAACTTAGAACTTTGATGCTCTCCTT

Ace file of the UniGene sp_v2.0_unigene55976

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat receptor protein kinase EXS [Arabidopsis thaliana] sp\|Q9LYN8.1\|EXS_ARATH RecName: Full=Leucine-rich repeat receptor protein kinase EXS; AltName: Full=Extra sporogenous cells protein; AltName: Full=Protein EXCESS MICROSPOROCYTES 1; Flag	-	-	8.0e-20	54%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	40%
Blast2go	leucine-rich repeat receptor protein kinase exs-like	-	-	1.74781e-29	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	1.74781e-29	73%
Blast2go	tapetal cell fate specification	GO:0010234	Biological Process	1.74781e-29	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	1.74781e-29	73%
Blast2go	protein binding	GO:0005515	Molecular Function	1.74781e-29	73%
Blast2go	membrane	GO:0016020	Cellular Component	1.74781e-29	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 603 aas, your sequence is shorter than subject: 88 - 1145

Fln protein: PAEIGNLENVKNLYLTSCSLWGPIPDEISNMLSLSKLDLSNNPLRSPIPEAIGNLSNLTILNMVNSELNGTIPSELGKCRKLRTLMLS

Protein Length: 89

Fln nts: GCCTGCAGAAATTGGTAATCTGGAAAATGTAAAGAATTTGTATTTAACTTCTTGCTCCCTCTGGGGGCCCATTCCCGATGAGATATCTAATATGCTGTCCCTCAGTAAGCTAGACCTTTCCAACAATCCATTACGGTCCCCTATTCCTGAAGCCATTGGAAATCTGAGCAATCTCACTATTTTAAATATGGTGAACTCAGAACTCAATGGAACAATCCCTTCTGAATTGGGCAAATGCAGAAAACTTAGAACTTTGATGCTCTCCTT

Fln Alignment:

AllPineV4_c56033___PAEIGNLENVKNLYLTSCSLWGPIPDEISNMLSLSKLDLSNNPLRSPIPEAIGNLSNLTILNMVNSELNGTIPSELGKCRKLRTLML
Q9FEU2_______________PPSLFEIKNLTKLLLLSNELTGALPPEIGNCVALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain