SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55950

Length: 261 nt

UniGene Fasta

>sp_v2.0_unigene55950
TTCAATCATATAGGAACCTACGTCAACACGAGTTCCATTTACCATCCTCAAATAGATGGCCAAACCTTGGTTGTCAATAAATGTGTGGAAGCCTACCTGCGTTGTTATGCCACAAACAAACAAAACAAGTGGGCTCAGTGGTTACATCTTGCCGAATGGTGGTACAATTCCACTTACCACACATCAACAAAAATGACTCCCTTTCAAGCTTTGTACGATTATGAACCTTTGAAATGGAAGGACTTTGCTATCATCGACATT

Ace file of the UniGene sp_v2.0_unigene55950

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC	-	-	2.0e-21	53%
FL-Next	tr=Polyprotein; Primula vulgaris.	-	-	0.0	53%
Blast2go	retrotransposon unclassified	-	-	6.74239e-26	71%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Ribosomal protein S15	IPR000589	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	S15/NS1, RNA-binding	IPR009068	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5X2S4

Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 87 - 1359

Fln protein: FNHIGTYVNTSSIYHPQIDGQTLVVNKCVEAYLRCYATNKQNKWAQWLHLAEWWYNSTYHTSTKMTPFQALYDYEPLKWKDFAIIDI

Protein Length: 88

Fln nts: TTCAATCATATAGGAACCTACGTCAACACGAGTTCCATTTACCATCCTCAAATAGATGGCCAAACCTTGGTTGTCAATAAATGTGTGGAAGCCTACCTGCGTTGTTATGCCACAAACAAACAAAACAAGTGGGCTCAGTGGTTACATCTTGCCGAATGGTGGTACAATTCCACTTACCACACATCAACAAAAATGACTCCCTTTCAAGCTTTGTACGATTATGAACCTTTGAAATGGAAGGACTTTGCTATCATCGACATT

Fln Alignment:

AllPineV4_c56000___FNHIGTYVNTSSIYHPQIDGQTLVVNKCVEAYLRCYATNKQNKWAQWLHLAEWWYNSTYHTSTKMTPFQALYDYEPLKWKDFAI
A5X2S4_______________FHLLGTKLLLSTAFHPQTDGQTEIVNKSLETYLRCYTSQYPKNWAKWIYLAEFWYNSTTHTSIKMPPFKALYGYEPPKLSHYLL

SSRs (tot: 1)

Start position	End position	Sequence	Length
112	124	ACAA ACAA ACAA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain