SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55769

Length: 270 nt

UniGene Fasta

>sp_v2.0_unigene55769
ATGGGGGCCCAAACCTTTCAAATTTGCTATTGTGGATGAGGTTGATTCAGTCTTAATAGATGAAGGCCGGAATCCACTGTTTATAAGTGGTGAAGCCAGTAAAGATGCAGCACGATACCCTGTAGCTGCTCAAGTTGCTGAGTTTCTTGTACGTGATTATCATTACACTGTAGAGCTCAAGGACAATACGGTAGAACTCACCGAGGAAGGGGTAGCAGCTGCAGAGTTAGCCCTCGAGACAAATGATTTGTGGGATGAAAAGGATACATT

Ace file of the UniGene sp_v2.0_unigene55769

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein translocase subunit secA (Fragment) n=2 Tax=Vitis vinifera RepID=E0CR18_VITVI	-	-	1.0e-24	67%
FL-Next	sp=Protein translocase subunit SecA, chloroplastic; Ostreococcus lucimarinus (strain CCE9901).	-	-	0.0	51%
Blast2go	preprotein translocase seca-like protein	-	-	4.62089e-29	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	4.62089e-29	86%
Blast2go	embryo development	GO:0009790	Biological Process	4.62089e-29	86%
Blast2go	binding	GO:0005488	Molecular Function	4.62089e-29	86%
Blast2go	plastid	GO:0009536	Cellular Component	4.62089e-29	86%

Source	InterPros	Term	Type	Identity
Sma3	SecA protein	IPR000185	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	SecA DEAD-like, N-terminal	IPR011115	-	-
Sma3	SecA Wing/Scaffold	IPR011116	-	-
Sma3	SecA preprotein, cross-linking domain	IPR011130	-	-
Sma3	SecA motor DEAD	IPR014018	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A4RW83

Fln msg: Distance to subject end: 652 aas, your sequence is shorter than subject: 89 - 932

Fln protein: WGPKPFKFAIVDEVDSVLIDEGRNPLFISGEASKDAARYPVAAQVAEFLVRDYHYTVELKDNTVELTEEGVAAAELALETNDLWDEKDT

Protein Length: 90

Fln nts: ATGGGGGCCCAAACCTTTCAAATTTGCTATTGTGGATGAGGTTGATTCAGTCTTAATAGATGAAGGCCGGAATCCACTGTTTATAAGTGGTGAAGCCAGTAAAGATGCAGCACGATACCCTGTAGCTGCTCAAGTTGCTGAGTTTCTTGTACGTGATTATCATTACACTGTAGAGCTCAAGGACAATACGGTAGAACTCACCGAGGAAGGGGTAGCAGCTGCAGAGTTAGCCCTCGAGACAAATGATTTGTGGGATGAAAAGGATACATT

Fln Alignment:

AllPineV4_c55792___KPFKFAIVDEVDSVLIDEGRNPLFISGEASKDAARYPVAAQVAEFLVRDYHYTVELKDNXXXXXXXXXXXXXXXXXXNDLWDEK
A4RW83_______________RDFNFCIIDEVDSILIDEARTPLIISGVADKPSERYIQAAKIADAFEKDYHYKVDEKQKSVLLSEEGYEAAEDLLQVTDLYDPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain