SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55766

Length: 429 nt

UniGene Fasta

>sp_v2.0_unigene55766
ATGGGGATTTAATATTTGGCTGCAAGCAACGTGGCAAGCCAGCTGTAGAGGCTGCCAATGTGTTCTACCATTTAACTTATGAAGGTGCAGTTGATATAGAAGCAATAGAAGATGCATTACAACGGGATGCTGTTGAAGATCAAATTGCAAATTTCGGGCAGACACCTATCCAGCTTTTTCGGAAAAAGCATCCTAAGCGAGGGCTACCCATGCCCATTGCCTGTCCATTATACTATGCACCAGGCTCAATTACACTGACTTCAGTAGTTTCTGCAGGCTTTCAAGAACCGGCAGCAATAGTATTTGTTGGTGTGATGGAGTCAACTGTTGCACTTGTAAGCCAGGGGCTTATCATGTCAGTCAAAATGTGGCTAACTTCACAATTACAGACTGGAGGCAACTTCACCTTTTCGTCTTCACAGGAACCTA

Ace file of the UniGene sp_v2.0_unigene55766

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02138, Beach, Beige/BEACH domain	-	-	7.0e-26	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	70%
Blast2go	wd40 and beach domain-containing protein	-	-	0.0	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H145

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 142 - 3193

Fln protein: GDLIFGCKQRGKPAVEAANVFYHLTYEGAVDIEAIEDALQRDAVEDQIANFGQTPIQLFRKKHPKRGLPMPIACPLYYAPGSITLTSVVSAGFQEPAAIVFVGVMESTVALVSQGLIMSVKMWLTSQLQTGGNFTFSSSQEP

Protein Length: 143

Fln nts: ATGGGGATTTAATATTTGGCTGCAAGCAACGTGGCAAGCCAGCTGTAGAGGCTGCCAATGTGTTCTACCATTTAACTTATGAAGGTGCAGTTGATATAGAAGCAATAGAAGATGCATTACAACGGGATGCTGTTGAAGATCAAATTGCAAATTTCGGGCAGACACCTATCCAGCTTTTTCGGAAAAAGCATCCTAAGCGAGGGCTACCCATGCCCATTGCCTGTCCATTATACTATGCACCAGGCTCAATTACACTGACTTCAGTAGTTTCTGCAGGCTTTCAAGAACCGGCAGCAATAGTATTTGTTGGTGTGATGGAGTCAACTGTTGCACTTGTAAGCCAGGGGCTTATCATGTCAGTCAAAATGTGGCTAACTTCACAATTACAGACTGGAGGCAACTTCACCTTTTCGTCTTCACAGGAACCTA

Fln Alignment:

AllPineV4_c55789___DLIFGCKQRGKPAVEAANVFYHLTYEGAVDIEAIEDALQRDAVEDQIANFGQTPIQLFRKKHPKRGLPMPIACPLYYAPGSITLTSVVSAGFQEPAAIVFVGVMESTVALVSQGLIMSVKMWLTSQLQTGGNFTFSSSQEP
F6H145_______________DLVFGYKQRGKPAVEAANIFYYLTYEGAVELETMEDDLQRSAIEDQIANFGQTPIQIFRKKHPRRGPPIPIAHPLYFAPGSINLTSIVSSTSSPTSAVLYVGILDSNIVLVNQGLTMSVKMWLTTQLQSGGNFTFSGSQDP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain