SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55762

Length: 323 nt

UniGene Fasta

>sp_v2.0_unigene55762
ATGATGACTACTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGTTATTTTAGCTTATCTGTTAGTCATAGCCTGGTGTAAGCATAAGCGCCTTCTTGAATGAGCCATGCCCAAAATGCTCATCATTTTTCAGTGAGGTTTTTGGTGGAACCTGCTCATGTATTCTTTTAACTTATATAATTGTCATACTCTGGTGTAAGCATGAGTTCCTTTTAATAAGCAATGCCT

Ace file of the UniGene sp_v2.0_unigene55762

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	magnesium transporter MRS2-3 [Arabidopsis thaliana] sp\|Q9LJN2.1\|MRS23_ARATH RecName: Full=Magnesium transporter MRS2-3; AltName: Full=Magnesium Transporter 4; Short=AtMGT4 dbj\|BAB02549.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN17435.1\| unkno	-	-	1.0e-11	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	magnesium transporter	-	-	3.01267e-32	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	magnesium ion transport	GO:0015693	Biological Process	3.01267e-32	73%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	3.01267e-32	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.01267e-32	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQE7

Fln msg: your sequence is shorter than subject: 66 - 483

Fln protein: MMTTGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSCVILAYLLVIAWCKHKRLLE*

Protein Length: 67

Fln nts: ATGATGACTACTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGTTATTTTAGCTTATCTGTTAGTCATAGCCTGGTGTAAGCATAAGCGCCTTCTTGAATGA___GCCATGCCCAAAATGCTCATCATTTTTCAGTGAGGTTTTTGGTGGAACCTGCTCATGTATTCTTTTAACTTATATAATTGTCATACTCTGGTGTAAGCATGAGTTCCTTTTAATAAGCAATGCCT

Fln Alignment:

AllPineV4_c55785___MMTTGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSCVILAYLLVIAWCKHKRLLE
B8LQE7_______________MMTTGTLVMSAFLVVTGIFGMNIQISLFDDGGLPQFLWVVGGTGSCIILAYILVIAWCKHKRLLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain