SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55502

Length: 264 nt

UniGene Fasta

>sp_v2.0_unigene55502
CACCATGATTGTGTGCCTGCAATTCTGCACAGGGATGTCAAATGCAATAACATACTTCTGGATGCAAGGTTTGAGCCATATTTAGCCGATTTCGGCCTTGCCAAGCTGATGACTGCTTCTGATTTTCATCTTGCGATGTCCAGGGTTGCTGGTTCATATGGCTACATTGCTCCTGAGTATGGCTACACAATGAACATTACAGAGAAGAGTGATGTATACAGCTATGGAATTGTTCTCCTTGAGATTTTGACTGGCAGAGACATT

Ace file of the UniGene sp_v2.0_unigene55502

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRZ9_SOYBN	-	-	1.0e-37	86%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	70%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at1g34110-like	-	-	3.36312e-44	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	3.36312e-44	90%
Blast2go	metabolic process	GO:0008152	Biological Process	3.36312e-44	90%
Blast2go	kinase activity	GO:0016301	Molecular Function	3.36312e-44	90%

Source	InterPros	Term	Type	Identity
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 143 aas, your sequence is shorter than subject: 88 - 1145

Fln protein: HHDCVPAILHRDVKCNNILLDARFEPYLADFGLAKLMTASDFHLAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGIVLLEILTGRDI

Protein Length: 89

Fln nts: CACCATGATTGTGTGCCTGCAATTCTGCACAGGGATGTCAAATGCAATAACATACTTCTGGATGCAAGGTTTGAGCCATATTTAGCCGATTTCGGCCTTGCCAAGCTGATGACTGCTTCTGATTTTCATCTTGCGATGTCCAGGGTTGCTGGTTCATATGGCTACATTGCTCCTGAGTATGGCTACACAATGAACATTACAGAGAAGAGTGATGTATACAGCTATGGAATTGTTCTCCTTGAGATTTTGACTGGCAGAGACATT

Fln Alignment:

AllPineV4_c55473___HHDCVPAILHRDVKCNNILLDARFEPYLADFGLAKLMTASDFHLAMSRVAGSYGYIAPEYGYTMNITEKSDVYSYGIVLLEILTGR
Q9FEU2_______________HHDCRPPILHRDVKANNILLGSQYEPYLADFGLAKLVDSADFNRSSTTVAGSYGYIAPEYGYTMKITQKIDVYSFGVVLLEVVTGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain