SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55439

Length: 421 nt

UniGene Fasta

>sp_v2.0_unigene55439
TGGAAAGCTACTGTGCTCATGTTTTGTTATCACAAGATGAAGTTTATTTTAGTGCTGGTGAATCTAAAGGTTTCTCTTTAGTTTATGAGCCACGACCTACCTCACAGGTGGAAGAGCTTCTACGAAGAAAACACGTCAAAGAGGTCTCTCAAAGGGAACTGGAGACCTTTGTATGTGCTGTAAAGTCTGCCAGACAACAGCCTATTCATGCAAAACCTCCAAAATGCTACTGGCTGACTGATGAGAAAATACGCTTCCGGATAGAAGCGCTTGAAGCTTTTGCCTTAGATGCCTGTAAATGTGATGAACAAAAAGGTCAGCTGCTGAGGTATTGAAGAAGTTGGGAATGTTAAAAGCCTCATCTTCTGCAGCAGACTTGTTAATAGATATTGGTTAATTTTCCTATTCATGTCAATCTCGA

Ace file of the UniGene sp_v2.0_unigene55439

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonuclease II, putative n=1 Tax=Ricinus communis RepID=B9T6X7_RICCO	-	-	2.0e-33	57%
FL-Next	tr=Ribonuclease II, putative; Ricinus communis (Castor bean).	-	-	0.0	57%
Blast2go	uncharacterized ribonuclease sll1290-like	-	-	8.43068e-34	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	rRNA processing	GO:0006364	Biological Process	8.43068e-34	66%
Blast2go	chloroplast organization	GO:0009658	Biological Process	8.43068e-34	66%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	8.43068e-34	66%
Blast2go	mitochondrion	GO:0005739	Cellular Component	8.43068e-34	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	8.43068e-34	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribonuclease II/R	IPR001900	-	0.0	-
Sma3	Peptidase S54, rhomboid	IPR002610	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T6X7

Fln msg: Overlapping hits, possible frame ERROR between 314 and 311, Unexpected STOP codon at 3' end. Distance to subject end: 376 aas, your sequence is shorter than subject: 132 - 731

Fln protein: ESYCAHVLLSQDEVYFSAGESKGFSLVYEPRPTSQVEELLRRKHVKEVSQRELETFVCAVKSARQQPIHAKPPKCYWLTDEKIRFRIEALEAFALDACKCDExxxSAAEVLKKLGMLKASSSAADLLIDIG*

Protein Length: 133

Fln nts: TGGAAAGCTACTGTGCTCATGTTTTGTTATCACAAGATGAAGTTTATTTTAGTGCTGGTGAATCTAAAGGTTTCTCTTTAGTTTATGAGCCACGACCTACCTCACAGGTGGAAGAGCTTCTACGAAGAAAACACGTCAAAGAGGTCTCTCAAAGGGAACTGGAGACCTTTGTATGTGCTGTAAAGTCTGCCAGACAACAGCCTATTCATGCAAAACCTCCAAAATGCTACTGGCTGACTGATGAGAAAATACGCTTCCGGATAGAAGCGCTTGAAGCTTTTGCCTTAGATGCCTGTAAATGTGATGAAxxxxxxxxxTCAGCTGCTGAGGTATTGAAGAAGTTGGGAATGTTAAAAGCCTCATCTTCTGCAGCAGACTTGTTAATAGATATTGGTTAATTTTCCTATTCATGTCAATCTCGA

Fln Alignment:

AllPineV4_c55396___ESYCAHVLLSQDEVYFSAGESKGFSLVYEPRPTSQVEELLRRKHVKEVSQRELETFVCAVKSARQQPIHAKPPKCYWLTDEKIRFRIEALEAFALDACKCDEQxRSAAEVLKKLGMLKASSSAADLLIDIG*F
B9T6X7_______________ESYCAHLLLSKDEMYFTVLETKGSRSLYGPRPTSQVEELMHRKLAKDAAEKELQEFVQLLKSAKAMPSHAKPSKSSWMIEEKTRHKIESLEAYAIDACKSDDQxRTAGMILKAMGMAKIASSALNLLIDVGYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain