SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55347

Length: 405 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene55347
CCTACAATCATTTACTCAGTGTCCTTGTAGATGAGAATAGGCTTAAGATGGTCGAGTCACTGTACTCACAAATGAAGGCTGCTGGAGTCCAACCTGATGTCAAGACCTTCAACATATTGATAAAGACCCTCTGCAGGTCTAACCAATTGGGTTCTGCATTGGGTATGTTGAAAGAGATTCTTAACCATGGATTGGTCCCTGATTATATAACATATAACACTCTTATCCGTGGGTTCAGCAAGGAGGGTAGGATGGAAGAGGCTTTGGAGTTGTATAAGGAAATACATTCCCGTGGGTGTGTTCCTAACAGCGTTACACATAATGTTCTTCTTCATGGTTTCTGTAGGCAGGGTAAGGTGGAGGAGGCAACGAGCCTTCTGCAAGAGATTTCTGGTACTGGTTTCT

Ace file of the UniGene sp_v2.0_unigene55347 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SZC0_RICCO	-	-	5.0e-32	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	pentatricopeptide repeat-containing	-	-	4.55541e-37	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	4.55541e-37	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.55541e-37	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 134 - 486

Fln protein: YNHLLSVLVDENRLKMVESLYSQMKAAGVQPDVKTFNILIKTLCRSNQLGSALGMLKEILNHGLVPDYITYNTLIRGFSKEGRMEEALELYKEIHSRGCVPNSVTHNVLLHGFCRQGKVEEATSLLQEISGTGF

Protein Length: 135

Fln nts: CCTACAATCATTTACTCAGTGTCCTTGTAGATGAGAATAGGCTTAAGATGGTCGAGTCACTGTACTCACAAATGAAGGCTGCTGGAGTCCAACCTGATGTCAAGACCTTCAACATATTGATAAAGACCCTCTGCAGGTCTAACCAATTGGGTTCTGCATTGGGTATGTTGAAAGAGATTCTTAACCATGGATTGGTCCCTGATTATATAACATATAACACTCTTATCCGTGGGTTCAGCAAGGAGGGTAGGATGGAAGAGGCTTTGGAGTTGTATAAGGAAATACATTCCCGTGGGTGTGTTCCTAACAGCGTTACACATAATGTTCTTCTTCATGGTTTCTGTAGGCAGGGTAAGGTGGAGGAGGCAACGAGCCTTCTGCAAGAGATTTCTGGTACTGGTTTCT

Fln Alignment:

AllPineV4_c55281___YNHLLSVLVDENRLKMVESLYSQMKAAGVQPDVKTFNILIKTLCRSNQLGSALGMLKEILNHGLVPDYITYNTLIRGFSKEGRMEEALELYKEIHSRGCVPNSVTHNVLLHGFCRQGKVEEATSLLQEISGTG
D5AAH0_______________YNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain