SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55263

Length: 403 nt

UniGene Fasta

>sp_v2.0_unigene55263
AATGTGCATGGTACAACGCAGAGTACGCGGGGCACTTAAAAACCCCTCTTCTTTATTCAGTTCTATGGGGTTTTGTTCATCCATCCAGAAACATGATACTAGTTCCATTGATGTTGAGACTGTTGAAAAATCTAATGAAAAGATAGGACCATTACCTGGGCAATAGATATCAAAATAGGACCCGGAAAAAAGGTAGTAGTTATTTCTGGACCTAATACTGGAGGCAAAACAGCAACAATGAAGACTCTAGGGATAGCTGCTTTGATGGCAAAAGCTGGCATGTTTTTACCAGCTAAGGGTCAACCGAAGCTTCCATGGTTTGACCATGTCATGGCAGATATTGGTGATAGTCAGTCATTGGAGCAAAGCTTATCCACATATAGCGCACATATACAATGCCTTT

Ace file of the UniGene sp_v2.0_unigene55263

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA mismatch repair protein MutS2 [Arabidopsis thaliana] gb\|AAF06041.1\|AC009360_6 Contains similarity to gb\|D90908 DNA mismatch repair protein MutS2 from Synechocystis sp. and is a member of PF\|00488 Muts family of mismatch repair proteins [Arabidopsis th	-	-	4.0e-25	70%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	67%
Blast2go	2 family protein	-	-	7.35724e-31	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	7.35724e-31	85%
Blast2go	binding	GO:0005488	Molecular Function	7.35724e-31	85%
Blast2go	nucleus	GO:0005634	Cellular Component	7.35724e-31	85%

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA mismatch repair protein MutS, type 2	IPR005747	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8TEB9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 404 aas, your sequence is shorter than subject: 134 - 825

Fln protein: NVHGTTQSTRGT*KPLFFIQFYGVLFIHPET*Y*FH*C*DC*KI**KDRTITWAIDIKIGPGKKVVVISGPNTGGKTATMKTLGIAALMAKAGMFLPAKGQPKLPWFDHVMADIGDSQSLEQSLSTYSAHIQCL

Protein Length: 135

Fln nts: AATGTGCATGGTACAACGCAGAGTACGCGGGGCACTTAAAAACCCCTCTTCTTTATTCAGTTCTATGGGGTTTTGTTCATCCATCCAGAAACATGATACTAGTTCCATTGATGTTGAGACTGTTGAAAAATCTAATGAAAAGATAGGACCATTACCTGGGCAATAGATATCAAAATAGGACCCGGAAAAAAGGTAGTAGTTATTTCTGGACCTAATACTGGAGGCAAAACAGCAACAATGAAGACTCTAGGGATAGCTGCTTTGATGGCAAAAGCTGGCATGTTTTTACCAGCTAAGGGTCAACCGAAGCTTCCATGGTTTGACCATGTCATGGCAGATATTGGTGATAGTCAGTCATTGGAGCAAAGCTTATCCACATATAGCGCACATATACAATGCCTTT

Fln Alignment:

AllPineV4_c55178___IDIKIGPGKKVVVISGPNTGGKTATMKTLGIAALMAKAGMFLPAKGQPKLPWFDHVMADIGDSQSLEQSLSTYSAHIQCL
D8TEB9_______________IDIKVRDGVKIVIISGPNTGGKTVALKTLGIASIMAKAGLYLPASGNPRLPWFDRIFADVGDSQSLEQNLSTFSGHMRRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain