SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55030

Length: 780 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene55030

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI	-	-	65%
FL-Next	sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	dna ligase	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	77%
Blast2go	DNA repair	GO:0006281	Biological Process	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	DNA ligase, ATP-dependent	IPR000977	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	-
Sma3	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	-
Sma3	DNA ligase, ATP-dependent, central	IPR012310	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
592	33		66		0.997452
593		66		33	0.997452
595	66			33	0.997452
683		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain