SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene55028

Length: 302 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene55028
ATTTATCACAGAGACATCAAAGCCACTAACATTCTGTTAGATGACGATATGAATGCTCGTGTTGCCGATTTTGGTTTGGCGAGGATCATGACTAAAGAAGATGCAGCAGAATCCCATTTGACAACAAGGGTAGCAGGTACGCACGGCTACTTGGCCCCCGAATATGCTCTCTACGGCCAACTCACAGATAAAAGTGATGTGTATAGCTTTGGGGTTCTGCTGTTGGAGATCATGAGCGGCAGAAAAGCTCTCGACACCACTGCCTCCCATTATCTCATAGCGGATTGGGCATGGGAGACATT

Ace file of the UniGene sp_v2.0_unigene55028 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase n=4 Tax=Andropogoneae RepID=B6SY15_MAIZE	-	-	6.0e-35	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	probable receptor-like protein kinase at1g11050-like	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACH5

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 100 - 246

Fln protein: IYHRDIKATNILLDDDMNARVADFGLARIMTKEDAAESHLTTRVAGTHGYLAPEYALYGQLTDKSDVYSFGVLLLEIMSGRKALDTTASHYLIADWAWET

Protein Length: 101

Fln nts: ATTTATCACAGAGACATCAAAGCCACTAACATTCTGTTAGATGACGATATGAATGCTCGTGTTGCCGATTTTGGTTTGGCGAGGATCATGACTAAAGAAGATGCAGCAGAATCCCATTTGACAACAAGGGTAGCAGGTACGCACGGCTACTTGGCCCCCGAATATGCTCTCTACGGCCAACTCACAGATAAAAGTGATGTGTATAGCTTTGGGGTTCTGCTGTTGGAGATCATGAGCGGCAGAAAAGCTCTCGACACCACTGCCTCCCATTATCTCATAGCGGATTGGGCATGGGAGACATT

Fln Alignment:

AllPineV4_c54894___IYHRDIKATNILLDDDMNARVADFGLARIMTKEDAAESHLTTRVAGTHGYLAPEYALYGQLTDKSDVYSFGVLLLEIMSGRKALDTTAS---HYLIADWAW
D5ACH5_______________IYHRDIKPTNILLDDEMNAFVADFGLARMMTK--GGESHITTKVAGTHGYLAPEYALYGQLTDKSDVYSFGVLLLEIMSGRKALDTSGKSVPHYLITDWAW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain