SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54971

Length: 366 nt

UniGene Fasta

>sp_v2.0_unigene54971
AATGTGCTAGAGGATTATTCGAAGACATGCAGAATAATGGTTTGTTACCTGACTATGTTACTTATACCACACTGATCGATGGATACTGCAAGAAGGGTGACTTGCTGGAAGCTTTGCAATTGTGGGATGAAATGTTGCGTGACAATTTGAAACCAGATGTTGTTGCTTACAACGCACTGCTATGTGGATATTGCATTGAAGGTCGCTTGTTGGAGGCTATTGAACTTCGTGATGAAATGGTGGATAAAGGTATTTTGCCTAATGTGATCACTTACAATACTCTTGTTCATGGCTTCTGCATGGCAAGTCAGATGGAAGAAGTGACCAATCTGTTGGATGAAATGATAAGGAGAGGAGTGGAACCAG

Ace file of the UniGene sp_v2.0_unigene54971

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12854, PPR_1, PPR repeat	-	-	8.0e-12	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	pentatricopeptide repeat-containing	-	-	3.04401e-30	65%

Source	InterPros	Term	Type	Identity
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH0

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 121 - 486

Fln protein: CARGLFEDMQNNGLLPDYVTYTTLIDGYCKKGDLLEALQLWDEMLRDNLKPDVVAYNALLCGYCIEGRLLEAIELRDEMVDKGILPNVITYNTLVHGFCMASQMEEVTNLLDEMIRRGVEP

Protein Length: 122

Fln nts: AATGTGCTAGAGGATTATTCGAAGACATGCAGAATAATGGTTTGTTACCTGACTATGTTACTTATACCACACTGATCGATGGATACTGCAAGAAGGGTGACTTGCTGGAAGCTTTGCAATTGTGGGATGAAATGTTGCGTGACAATTTGAAACCAGATGTTGTTGCTTACAACGCACTGCTATGTGGATATTGCATTGAAGGTCGCTTGTTGGAGGCTATTGAACTTCGTGATGAAATGGTGGATAAAGGTATTTTGCCTAATGTGATCACTTACAATACTCTTGTTCATGGCTTCTGCATGGCAAGTCAGATGGAAGAAGTGACCAATCTGTTGGATGAAATGATAAGGAGAGGAGTGGAACCAG

Fln Alignment:

AllPineV4_c54823___ARGLFEDMQNNGLLPDYVTYTTLIDGYCKKGDLLEALQLWDEMLRDNLKPDVVAYNALLCGYCIEGRLLEAIELRDEMVDKGILPNVITYNTLVHGFCMASQMEEVTNLLDEMIRRGVEP
D5AAH0_______________ALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain