SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54915

Length: 228 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene54915
ATACATCAAATGGATGTCAAATCTGCTTTTCTAAATGGTGATTTAAAGGAAGAAGTTTATTTGGTTCAACCTGAAGGGTTTGTCAAACATGGACAGGAGCATCTGGTTTGCAGGTTAAGAAAGGCATTGTATGGTTTGAAACAGGCACCAAGATCATGGTATGTAAAGATTGATACCTTCTTTCTTCAGAATGGTTTTGTGAAAAGCAAAAATGAACCTACTTGTATG

Ace file of the UniGene sp_v2.0_unigene54915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Cycas revoluta RepID=Q4JQ46_CYCRE	-	-	6.0e-23	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	reverse transcriptase	-	-	3.67401e-30	82%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	GPI biosynthesis protein Pig-F	IPR009580	-	-
Sma3		IPR010256	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 76 - 363

Fln protein: IHQMDVKSAFLNGDLKEEVYLVQPEGFVKHGQEHLVCRLRKALYGLKQAPRSWYVKIDTFFLQNGFVKSKNEPTCM

Protein Length: 77

Fln nts: ATACATCAAATGGATGTCAAATCTGCTTTTCTAAATGGTGATTTAAAGGAAGAAGTTTATTTGGTTCAACCTGAAGGGTTTGTCAAACATGGACAGGAGCATCTGGTTTGCAGGTTAAGAAAGGCATTGTATGGTTTGAAACAGGCACCAAGATCATGGTATGTAAAGATTGATACCTTCTTTCTTCAGAATGGTTTTGTGAAAAGCAAAAATGAACCTACTTGTATG

Fln Alignment:

AllPineV4_c54758___IHQMDVKSAFLNGDLKEEVYLVQPEGFVKHGQEHLVCRLRKALYGLKQAPRSWYVKIDTFFLQNGFVKSKNEPT
B8LKV8_______________VYQMDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
105		66		33	0.997454
120	66	33			0.997476
147	33		66		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain