SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54588

Length: 304 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene54588
TGGACTGGAATGATTGCAGGATATGTTCAGGATGGAGATGCGGAAGAGGTGTTGAGACTATTTTGGCAAATGCAGCAGGCAGGTTCAAAGCCAAACCAGTTTACAACTTCTTGTGTTCTAAGCGCATGTTCTGATATTAAAGCTGCGGATCAGGGCAAACAGATTCACACGCATGTAATAAAGACTGAACTTGAGGCAGATAATTTTGTAGGGAATGCCCTTATTGACTTGTATTCCAAATGTGGGAGGCTAGAGGATGCACGACGAGTGTTTGAAATTTTGCCAGAACGAGATACTGTTTCAT

Ace file of the UniGene sp_v2.0_unigene54588 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9FIF7.1\|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic; Flags: Precursor dbj\|BAB09765.1\| unnamed protein product [Arabidopsis t	-	-	3.0e-21	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	pentatricopeptide repeat-containing	-	-	1.65543e-27	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	1.65543e-27	68%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.65543e-27	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	EGF-like region, conserved site	IPR013032	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: STOP codon was not found. Distance to subject end: 24 aas, your sequence is shorter than subject: 101 - 394

Fln protein: WTGMIAGYVQDGDAEEVLRLFWQMQQAGSKPNQFTTSCVLSACSDIKAADQGKQIHTHVIKTELEADNFVGNALIDLYSKCGRLEDARRVFEILPERDTVS

Protein Length: 102

Fln nts: TGGACTGGAATGATTGCAGGATATGTTCAGGATGGAGATGCGGAAGAGGTGTTGAGACTATTTTGGCAAATGCAGCAGGCAGGTTCAAAGCCAAACCAGTTTACAACTTCTTGTGTTCTAAGCGCATGTTCTGATATTAAAGCTGCGGATCAGGGCAAACAGATTCACACGCATGTAATAAAGACTGAACTTGAGGCAGATAATTTTGTAGGGAATGCCCTTATTGACTTGTATTCCAAATGTGGGAGGCTAGAGGATGCACGACGAGTGTTTGAAATTTTGCCAGAACGAGATACTGTTTCAT

Fln Alignment:

AllPineV4_c54375___WTGMIAGYVQDGDAEEVLRLFWQMQQAGSKPNQFTTSCVLSACSDIKAADQGKQIHTHVIKTELEADNFVGNALIDLYSKCGRLEDARRVFEILPERDTVS
B8LKN6_______________WTAMVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain