SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54535

Length: 310 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene54535
AAGTACGACAGACACTGAGGGACGCAGATGAGTTTGTTGGAGCCCCTAGAACCGAGAAGAGGTAGCATAGACAGCCTGACAGATACCAGGCCTTGGTAGCACAGGTTGAAGAACCCTCTAGCTTTCAGAAAGTCATTCAACACCAAGTGTGGGTGGATGCCATGGTAGAAGAGTATAGTTCGATCATGAAGAATGATATCTGGGAAATAATACCTAAACCAGAGGATAGATCAGTTGTAGCATCAAGGTGGATCTACAAGATCAAGTATGCTGCAGAAGGCAGTATAGAGAAGTACAAGGCTAGGACATT

Ace file of the UniGene sp_v2.0_unigene54535 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ	-	-	4.0e-13	44%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	33%
Blast2go	retrotransposon unclassified	-	-	2.52209e-15	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 102 - 542

Fln protein: VRQTLRDADEFVGAPRTEKR*HRQPDRYQALVAQVEEPSSFQKVIQHQVWVDAMVEEYSSIMKNDIWEIIPKPEDRSVVASRWIYKIKYAAEGSIEKYKART

Protein Length: 103

Fln nts: AAGTACGACAGACACTGAGGGACGCAGATGAGTTTGTTGGAGCtCCTAGAACCGAGAAGAGGTAGCATAGACAGCCTGACAGATACCAGGCCTTGGTAGCACAGGTTGAAGAACCCTCTAGCTTTCAGAAAGTCATTCAACACCAAGTGTGGGTGGATGCCATGGTAGAAGAGTATAGTTCGATCATGAAGAATGATATCTGGGAAATAATACCTAAACCAGAGGATAGATCAGTTGTAGCATCAAGGTGGATCTACAAGATCAAGTATGCTGCAGAAGGCAGTATAGAGAAGTACAAGGCTAGGACATT

Fln Alignment:

AllPineV4_c54313___R*HRQPDRYQ--------ALVAQVEEPSSFQKVIQHQ---VWVDAMVEEYSSIMKNDIWEIIPKPEDRSVVASRWIYKIKYAAEGSIEKYKAR
Q9M5J7_______________RDRRQPERYSPPGFHSNFSLSITDDDPITVREAVNSEDSKLWKKPMVEEMDSLDKNESWDIVELLARRKSVGRKWLFKKKFNVEGKVEKYKAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain