SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54371

Length: 520 nt

UniGene Fasta

>sp_v2.0_unigene54371
GACGCTTTACGACGTGGACCTGGTGCAGAGGATATTGGAGCACTTCTTGATGCAACAACAAACTCAGGAGCCGCCTAGTCCTTGTCGCAGTGCCGGATATGGTGCGTCTGCTGGGGAAAAACTGCATGCCGCAGCAGCTGCTAGCGCAATAACAAAAGTAGCTAGGCTTGTGGACAGTTATATAACGGAGATTGCTCGGGACAGGAATCTTTCAATGAGCAAATTTCAAGTTCTGGCTGAAGCGTTGCCGGACAGTGCTCGAACTTGTGACGATGGCCTATACAGAGCGATTGATTCCTATCTCAAGGCCCATCCTGTGTTATCAGAACACGAACGGAAAAGGCTATGTAAAGTAATGAATTACGAGACGTTATCACTTGACGCTTGCATACACGCTGCTCATAACGAGCGTCTTCCTCTGAGGACTGTCGTACAGGTTCTCTTCTCCCAGCAAGCAAAGATGGCAAACACAATTGCCAGCAATAACGTGCCCATCAAAATGGATGATGATCATAATCGA

Ace file of the UniGene sp_v2.0_unigene54371

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NPH3 domain containing protein	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	root phototropism protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	phototropism	GO:0009638	Biological Process	78%
Blast2go	blue light signaling pathway	GO:0009785	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 173 - 648

Fln protein: TLYDVDLVQRILEHFLMQQQTQEPPSPCRSAGYGASAGEKLHAAAAASAITKVARLVDSYITEIARDRNLSMSKFQVLAEALPDSARTCDDGLYRAIDSYLKAHPVLSEHERKRLCKVMNYETLSLDACIHAAHNERLPLRTVVQVLFSQQAKMANTIASNNVPIKMDDDHNR

Protein Length: 174

Fln nts: GACGCTTTACGACGTGGACCTGGTGCAGAGGATATTGGAGCACTTCTTGATGCAACAACAAACTCAGGAGCCGCCTAGTCCTTGTCGCAGTGCCGGATATGGTGCGTCTGCTGGGGAAAAACTGCATGCCGCAGCAGCTGCTAGCGCAATAACAAAAGTAGCTAGGCTTGTGGACAGTTATATAACGGAGATTGCTCGGGACAGGAATCTTTCAATGAGCAAATTTCAAGTTCTGGCTGAAGCGTTGCCGGACAGTGCTCGAACTTGTGACGATGGCCTATACAGAGCGATTGATTCCTATCTCAAGGCCCATCCTGTGTTATCAGAACACGAACGGAAAAGGCTATGTAAAGTAATGAATTACGAGACGTTATCACTTGACGCTTGCATACACGCTGCTCATAACGAGCGTCTTCCTCTGAGGACTGTCGTACAGGTTCTCTTCTCCCAGCAAGCAAAGATGGCAAACACAATTGCCAGCAATAACGTGCCCATCAAAATGGATGATGATCATAATCGA

Fln Alignment:

AllPineV4_c54131___TLYDVDLVQRILEHFLMQQQTQEP----PSPCRSAGYGXXXXXXXXXXXXXXXXXXXXRLVDSYITEIARDRNLSMSKFQVLAEALPDSARTCDDGLYRAIDSYLKAHPVLSEHERKRLCKVMNYETLSLDACIHAAHNERLPLRTVVQVLFSQQAKMANTIA
B8LPD8_______________TLYDIDCVQRILQHFMAGQQGAESTLVNPHGFEEGGF--------MGSPSMTPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRVVVQVLFFEQLQLRNAIA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain