SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54260

Length: 533 nt

UniGene Fasta

>sp_v2.0_unigene54260
CCTAGATGTTGACTTGGTTGGGGTTGCTGGTTTGCAATTCATGGAAGCTATCAAGGTTGCAGACTTAACATCTGCTGAATTTAGCATGATAAGTGCACTGGATTCTGAATCTCTTGCCTTGCAAATTGGAAATAAACTCACTGTTGGGGATGTCGTTTTAGTTAAAGGGAGCCGAGGAATGAAAATGGAGGTGATAGTTGATGTTATTGGATCTATTCAAGTCTAAGAAATAAAGTGCCTTATTAGTGATAATAACAATGTGGGAGCATCTTCCGTTTGTTTTAGCATAAAGAGTCACTAATGCATGCCCACATTAATGGGTACTGTTATGCATCTTCACATTAATGGTTGTTGTTATGTATGCTTGCATTGATGCCCCTCACTCATGAGATCGTTTGTAACTCCCGTAGATTTACAGTTTAGTAACTCACAATTGTCAATCATTGAGGATTGTAACAGCTTTCTTTCTCGGATTACTCTAGTATGTAAACTGGCTATAGTGTGCTATTTGAGCCAAGAGCGATGTCCATATC

Ace file of the UniGene sp_v2.0_unigene54260

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	unknown [Picea sitchensis]	-	-	2.54157e-28	75%

Source	InterPros	Term	Type	Identity
Sma3	Mur ligase, C-terminal	IPR004101	-	-
Sma3	Ribosomal protein L18/L5	IPR005484	-	-
Sma3	UDP-MurNAc-pentapeptide synthetase	IPR005863	-	-
Sma3	Mur ligase, central	IPR013221	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMX3

Fln msg: your sequence is shorter than subject: 75 - 583

Fln protein: LDVDLVGVAGLQFMEAIKVADLTSAEFSMISALDSESLALQIGNKLTVGDVVLVKGSRGMKMEVIVDVIGSIQV*

Protein Length: 76

Fln nts: CCTAGATGTTGACTTGGTTGGGGTTGCTGGTTTGCAATTCATGGAAGCTATCAAGGTTGCAGACTTAACATCTGCTGAATTTAGCATGATAAGTGCACTGGATTCTGAATCTCTTGCCTTGCAAATTGGAAATAAACTCACTGTTGGGGATGTCGTTTTAGTTAAAGGGAGCCGAGGAATGAAAATGGAGGTGATAGTTGATGTTATTGGATCTATTCAAGTCTAA___GAAATAAAGTGCCTTATTAGTGATAATAACAATGTGGGAGCATCTTCCGTTTGTTTTAGCATAAAGAGTCACTAATGCATGCCCACATTAATGGGTACTGTTATGCATCTTCACATTAATGGTTGTTGTTATGTATGCTTGCATTGATGCCCCTCACTCATGAGATCGTTTGTAACTCCCGTAGATTTACAGTTTAGTAACTCACAATTGTCAATCATTGAGGATTGTAACAGCTTTCTTTCTCGGATTACTCTAGTATGTAAACTGGCTATAGTGTGCTATTTGAGCCAAGAGCGATGTCCATATC

Fln Alignment:

AllPineV4_c53996___LDVDLVGVAGLQFMEAIKVADLTSAEFSMISALDSESLALQIGNKLTVGDVVLVKGSRGMKMEVIVDVIGSIQV
B8LMX3_______________LGIELVGIAGLQFMEAIKVADLTSAEFSVISALDSESLASQIGKKFTAGDVVLVKGSRGMRMEVIVDVIRSIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain