SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54229

Length: 546 nt

UniGene Fasta

>sp_v2.0_unigene54229
CCCTGCCTGTGCTGACTTAGCAGACCTGCAAGAGGGTAAACGTATCCATGATTACATTATAGAAAATGGATTTGAGTCGGATGTTTCGGTGGGGACTGCTCTTGTAGCGATGTATGCAAATTGTGGGTGTATAGAGCAGGCACTACAATTATTTGACAAAATGCCCAAAAGAGACGTGGTTGCGTGGAATGCAATGATTGCAGCGTGTGCCCAAAACGGATATGCAAGTGAGGCTTTGGGATTGCTTTATCAGATGCAAGTGGCACGTGTGCAATGCGACGTCGTTACCATGGTGAGTGTACTGCCAGCGTGTGCCCATCTAGCGGAACTTCATCAAGGAGAGTTGGTCCATGAATATGCAATTAGAAATGGCTTTGAATCAGATGTCTCTTTGAAGAATGCCCTCGTAGACATGTATGCCAAATGTGGGGTTATAGAGAAAGCCTACCAATTGTTAAAAAAAATTCCAGTAGAGACAATGTCTCGTGGAATGCAATGATTGCGGGGTTTGCTCAAAAATGGACTTGCTGTTGATGCCTTGGAACA

Ace file of the UniGene sp_v2.0_unigene54229

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SKC9_RICCO	-	-	2.0e-35	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 289 aas, your sequence is shorter than subject: 166 - 795

Fln protein: PACADLADLQEGKRIHDYIIENGFESDVSVGTALVAMYANCGCIEQALQLFDKMPKRDVVAWNAMIAACAQNGYASEALGLLYQMQVARVQCDVVTMVSVLPACAHLAELHQGELVHEYAIRNGFESDVSLKNALVDMYAKCGVIEKAYQLLKKIPVETMSRGMQ*

Protein Length: 167

Fln nts: CCCTGCCTGTGCTGACTTAGCAGACCTGCAAGAGGGTAAACGTATCCATGATTACATTATAGAAAATGGATTTGAGTCGGATGTTTCGGTGGGGACTGCTCTTGTAGCGATGTATGCAAATTGTGGGTGTATAGAGCAGGCACTACAATTATTTGACAAAATGCCCAAAAGAGACGTGGTTGCGTGGAATGCAATGATTGCAGCGTGTGCCCAAAACGGATATGCAAGTGAGGCTTTGGGATTGCTTTATCAGATGCAAGTGGCACGTGTGCAATGCGACGTCGTTACCATGGTGAGTGTACTGCCAGCGTGTGCCCATCTAGCGGAACTTCATCAAGGAGAGTTGGTCCATGAATATGCAATTAGAAATGGCTTTGAATCAGATGTCTCTTTGAAGAATGCCCTCGTAGACATGTATGCCAAATGTGGGGTTATAGAGAAAGCCTACCAATTGTTAAAAAAAATTCCAGTAGAGACAATGTCTCGTGGAATGCAATGATTGCGGGGTTTGCTCAAAAATGGACTTGCTGTTGATGCCTTGGAACA

Fln Alignment:

AllPineV4_c53961___PACADLADLQEGKRIHDYIIENGFESDVSVGTALVAMYANCGCIEQALQLFDKMPKRDVVAWNAMIAACAQNGYASEALGLLYQMQVARVQCDVVTMVSVLPACAHLAELHQGELVHEYAIRNGFESDVSLKNALVDMYAKCGVIEKAYQLLKKIPVETMSRGMQ*LRGLLKNGLAVDAL
B8LQA8_______________PVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain