SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54212

Length: 1399 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene54212 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sinapyl alcohol dehydrogenase (Fragment) n=1 Tax=Cedrus deodara RepID=E5F5N8_CEDDE	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	sinapyl alcohol dehydrogenase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZE7

Fln msg:

Fln protein: MMKKGESGGFEVKGWAARDDSGVLSPFNFTRRKTGSHDVTFKVAYCGICHSDLHQIRNEWKNSLYPMVPGHEIVGTVLEVGSEVKNFAVGDRVGVGCMVWSCQHCDSCSKEQEQYCEKVVWTYNSIYVDGSPAFGGYSSLMVCDQRFVVKIPESLPFDAAAPLLCAGISVYSPMKYFQMTEPGKSLGVVGLGGLGHIAVKLGKAFGLKVTVISTSPRKEKEAREVLGADHFLISNDQKQMQEAARSLDYIIDTVSADHPLHHLINLLKVNGKLILVGMPEKPISFHPASVIFGRRIVGGSATGGVKETQEMLDFCAEHNISCMIENIAMDYVNTAIERLGKGDVKYRFVIDVTRSFSSPMAN*

Protein Length: 364

Fln nts: ATGGGGGCTCTATGGGAATGTAAGCTTCGGCTGTGCTCGCTCTCTTCAACTTGGCTGTTTACACTTGAACTGTCTGGAAATACAGTTCGATTCTGGTATTTCATAAAAT_-_ATGATGAAGAAAGGAGAATCAGGTGGATTTGAGGTTAAGGGATGGGCTGCCAGGGATGACTCCGGCGTCCTCTCGCCTTTCAACTTTACTCGCAGGAAAACGGGATCCCACGATGTAACTTTCAAGGTGGCATACTGTGGAATCTGTCACTCCGATCTGCATCAAATTCGGAATGAATGGAAAAATTCCCTATACCCAATGGTTCCAGGCCACGAAATCGTAGGGACTGTGCTTGAAGTCGGATCAGAAGTGAAGAATTTTGCTGTTGGAGATCGCGTGGGTGTAGGCTGCATGGTTTGGAGTTGCCAGCATTGCGATTCTTGTAGTAAAGAGCAAGAACAGTACTGTGAGAAGGTTGTTTGGACGTATAACAGCATTTATGTAGATGGGTCTCCCGCATTTGGAGGTTACTCTTCTTTGATGGTTTGTGACCAAAGGTTTGTAGTGAAAATCCCAGAGAGTCTGCCATTTGATGCTGCAGCACCACTGCTATGCGCAGGAATATCTGTATACAGCCCCATGAAATACTTCCAAATGACAGAGCCTGGAAAAAGCCTTGGTGTGGTGGGGCTTGGAGGTTTGGGACACATAGCTGTGAAACTTGGCAAAGCTTTTGGACTGAAAGTAACGGTAATCAGTACATCGCCTAGGAAGGAAAAGGAAGCCAGAGAGGTTTTGGGGGCAGATCACTTCTTGATCAGCAATGATCAGAAACAGATGCAGGAAGCAGCCAGGTCCCTGGATTACATAATTGACACCGTTTCTGCTGACCATCCCCTGCATCATCTCATCAATTTATTGAAAGTGAATGGGAAACTGATTTTGGTTGGCATGCCTGAAAAGCCTATTAGTTTTCATCCTGCGAGCGTTATATTTGGTCGGCGAATTGTGGGTGGGAGCGCCACTGGAGGAGTGAAGGAAACCCAAGAGATGTTGGACTTTTGTGCAGAGCATAACATCAGTTGCATGATTGAAAACATTGCAATGGACTACGTGAACACAGCAATTGAACGATTAGGGAAAGGAGACGTAAAGTACCGTTTTGTAATCGATGTTACTCGAAGCTTTTCAAGTCCAATGGCCAACTGA___TTGAAACTGAGATGGCGATGCTTTTATTTTCACTGAGACTCAGCAGTTTACATCTACAGACATACTGCAGTGCAAGTTTGGAACCCCTCTAGCAATTTCTTCGTAAATGCACCTGTTTTTAATACAAGTTTTTCTATGTTTCACGGCTGTCTCCTTCAAATAATTTTATATAATTATCAAGCTGTATGCTTGTGTTTTGCC

Fln Alignment:

AllPineV4_c53941___MMKKGESGGFEVK--GWAARDDSGVLSPFNFTRRKTGSHDVTFKVAYCGICHSDLHQIRNEWKNSLYPMVPGHEIVGTVLEVGSEVKNFAVGDRVGVGCMVWSCQHCDSCSKEQEQYCEKVVWTYNSIYVDGSPAFGGYSSLMVCDQRFVVKIPESLPFDAAAPLLCAGISVYSPMKYFQMTEPGKSXXXXXXXXXGHIAVKLGKAFGLKVTVISTSPRKEKEAREVLGADHFLISNDQKQMQEAARSLDYIIDTVSADHPLHHLINLLKVNGKLILVGMPEKPISFHPASVIFGRRIVGGSATGGVKETQEMLDFCAEHNISCMIENIAMDYVNTAIERLGKGDVKYRFVIDVTRSFSSPMAN
A9NZE7_______________MVNEGESGRFEVEVEGWAAKDESGILSPFNFTRRKTGSHDVTFKVAYCGICHSDLHQIRNDWKTSQYPMVPGHEIVGTVIEVGSQVKNFAVGDRVGVGCMVWSCQQCDSCSKDHEQYCEKVVWTYNGIYVDGSPTLGGYSSLMVCDHRFVVKIPECLPFDAAAPLLCAGITVYSPMKYFQMTEPGKSLGVVGLGGLGHMAVKFGKAFGLKVTVISTSPQKEKEAREHLGADNFLISKDQKQMLEAARSLDYIIDTVSADHPLHPIINLLKVNGKLVVVGMPEKPISFHPATVIFGRRFVGGSMIGGVKETQEMLDFCAEHNISCVIESIPMDYVNTAMQRLEKGDVKYRFVIDVTGSFSSPKAN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1408		33		66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain