SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene54102

Length: 457 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene54102
CGTCGTGACCTTGGCTGTCACTCAGCTTATAAGGTGTTCTTAGTCCAACCGGTGTGCGATAGACAAGAATGGCGGAGGTGAAAGTGGAAGCGCAGTGCTTAGCCACAGCATCCTGGTATAAATTGGTTGAGGATACCAAAGAGGAAATATTGGCGCGTCTGCCACCTGAATGCCTATGCAGATCTCGAGCCGTTTGCAAGGAGTGGAATGCCCTCTTTACATCCACAAAATTCATAACTAATAAATGGGCTGAGGCGCTTCCCAATAAAAAGCCTTGGTTGGTTCTGTGCAAAGAGAATAACGGAAGGGGCGGCTCAGTGAATTGTTGGAGGTATTGTTTTTTCACAAGGACATGGAAGAACATCTCCTTTTCATTCCTCCCGCGGGGAGATGAAAAGGTTCTGTACATTGGATCGGCCCAAGGTTTGTTCTTGGTCGATATCCCTATGGCATTCGC

Ace file of the UniGene sp_v2.0_unigene54102

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-like F-box; Galactose oxidase, central n=1 Tax=Medicago truncatula RepID=A2Q633_MEDTR	-	-	7.0e-08	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	f-box kelch-repeat protein	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACN2

Fln msg: Distance to subject end: 257 aas, your sequence is shorter than subject: 129 - 386

Fln protein: MAEVKVEAQCLATASWYKLVEDTKEEILARLPPECLCRSRAVCKEWNALFTSTKFITNKWAEALPNKKPWLVLCKENNGRGGSVNCWRYCFFTRTWKNISFSFLPRGDEKVLYIGSAQGLFLVDIPMAF

Protein Length: 130

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTATAAGGTGTTCTTAGTCCAACCGGTGTGCGATAGACAAGA_-_ATGGCGGAGGTGAAAGTGGAAGCGCAGTGCTTAGCCACAGCATCCTGGTATAAATTGGTTGAGGATACCAAAGAGGAAATATTGGCGCGTCTGCCACCTGAATGCCTATGCAGATCTCGAGCCGTTTGCAAGGAGTGGAATGCCCTCTTTACATCCACAAAATTCATAACTAATAAATGGGCTGAGGCGCTTCCCAATAAAAAGCCTTGGTTGGTTCTGTGCAAAGAGAATAACGGAAGGGGCGGCTCAGTGAATTGTTGGAGGTATTGTTTTTTCACAAGGACATGGAAGAACATCTCCTTTTCATTCCTCCCGCGGGGAGATGAAAAGGTTCTGTACATTGGATCGGCCCAAGGTTTGTTCTTGGTCGATATCCCTATGGCATTCGC

Fln Alignment:

AllPineV4_c53812___KVEAQCLATASWYKLVEDTKEEILARLPPECLCRSRAVCKEWNALFTSTKFITNKWAEALPNKKPWLVLCKENNGRGGSVNCWRYCFFTRTWKN-ISFSFLPRGDEKVLYIGSAQGLFLVDIP
D5ACN2_______________EVEEECSASAAWFELPEDTREEILAFLPLDCLCRSRSVCKEWNALFSSTKFITNKWAEAPLNKKPWLVLCKENNQRGSSMDCSRYCFFTRTWKNCISFSFLPRGDEKVQYFGSAQGLFLVDIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain