SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53838

Length: 520 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene53838
CGTCGTGACCTTGGCTGTCACTCGTGACCTTTTCTGCACTCAATTCTGGAAGCATGGGGAAGCAGAATTTTCAGGACTTTTTGTGCTTGGTTTTCTTTGCTCTTCTATTTGGTGGATTCTTATGTTGGCAGCGTTCTTTACAGATTTTGCAGGGACAGATCGATTTAGAAGTGATTTAAGCGTGGCCGATTTACGGACGATGCAGCAGCAAGAAGTCAGTCTTGTTACCAAAGGACACACGCTGCCGAAGAATACAAACAGGCCATCGGTGGATACTGATCAGACGGAATTGCTTTGGGGATTACAGCAATCGGGATCAGGAGACTGCAGTGGCAGGTATGTTTACATGTACAATCTGCCCTCAAAATTCAACGAGCTTCTTTTGACAGAATGCCAGAATTTGAGTGTGTGGACGAATATGTGTCCGCATATCGCTAACTCAGGGCTGGGGCAGCCATTACAGTGGGGGAAACAGGGCGATCCTGAGGCTGGAGAAATCACATGATGAGCGCTCATGGTT

Ace file of the UniGene sp_v2.0_unigene53838

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycosyltransferase, CAZy family GT47 n=1 Tax=Populus trichocarpa RepID=B9GRC8_POPTR	-	-	5.0e-12	29%
FL-Next	sp=Xyloglucan galactosyltransferase KATAMARI1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	xyloglucan galactosyltransferase katamari1-like	-	-	2.94001e-13	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	endomembrane system organization	GO:0010256	Biological Process	2.94001e-13	65%
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	2.94001e-13	65%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	2.94001e-13	65%
Blast2go	xyloglucan biosynthetic process	GO:0009969	Biological Process	2.94001e-13	65%
Blast2go	fucose biosynthetic process	GO:0042353	Biological Process	2.94001e-13	65%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	2.94001e-13	65%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	2.94001e-13	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XJ98

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 404 aas, your sequence is shorter than subject: 168 - 619

Fln protein: VVTLAVTRDLFCTQFWKHGEAEFSGLFVLGFLCSSIWWILMLAAFFTDFAGTDRFRSDLSVADLRTMQQQEVSLVTKGHTLPKNTNRPSVDTDQTELLWGLQQSGSGDCSGRYVYMYNLPSKFNELLLTECQNLSVWTNMCPHIANSGLGQPLQWGKQGDPEAGEIT*

Protein Length: 169

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACCTTTTCTGCACTCAATTCTGGAAGCATGGGGAAGCAGAATTTTCAGGACTTTTTGTGCTTGGTTTTCTTTGCTCTTCTATTTGGTGGATTCTTATGTTGGCAGCGTTCTTTACAGATTTTGCAGGGACAGATCGATTTAGAAGTGATTTAAGCGTGGCCGATTTACGGACGATGCAGCAGCAAGAAGTCAGTCTTGTTACCAAAGGACACACGCTGCCGAAGAATACAAACAGGCCATCGGTGGATACTGATCAGACGGAATTGCTTTGGGGATTACAGCAATCGGGATCAGGAGACTGCAGTGGCAGGTATGTTTACATGTACAATCTGCCCTCAAAATTCAACGAGCTTCTTTTGACAGAATGCCAGAATTTGAGTGTGTGGACGAATATGTGTCCGCATATCGCTAACTCAGGGCTGGGGCAGCCATTACAGTGGGGGAAACAGGGCGATCCTGAGGCTGGAGAAATCACATGATGAGCGCTCATGGTT

Fln Alignment:

AllPineV4_c53494___SGDCSGRYVYMYNLPSKFNELLLTECQNLSVWTNMCPHIANSGLGQPLQ
Q7XJ98_______________SDPCGGKYIYVHNLPSKFNEDMLRDCKKLSLWTNMCKFTTNAGLGPPLE

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
82			50	50	1.0
84		50		50	1.0
85			50	50	1.0
88	50			50	1.0
89		50	50		1.0
92			50	50	1.0
93		50	50		1.0
94	50		50		1.0
95		50		50	1.0
98			50	50	1.0
101	50			50	1.0
102		50		50	1.0
104		50	50		1.0
105	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
82			50	50	1.0
84		50		50	1.0
85			50	50	1.0
88	50			50	1.0
89		50	50		1.0
92			50	50	1.0
93		50	50		1.0
94	50		50		1.0
95		50		50	1.0
98			50	50	1.0
101	50			50	1.0
102		50		50	1.0
104		50	50		1.0
105	50	50			1.0

Position	A %	C %	G %	T %	Probability
82			50	50	1.0
84		50		50	1.0
85			50	50	1.0
88	50			50	1.0
89		50	50		1.0
92			50	50	1.0
93		50	50		1.0
94	50		50		1.0
95		50		50	1.0
98			50	50	1.0
101	50			50	1.0
102		50		50	1.0
104		50	50		1.0
105	50	50			1.0

Position	A %	C %	G %	T %	Probability
82			50	50	1.0
84		50		50	1.0
85			50	50	1.0
88	50			50	1.0
89		50	50		1.0
92			50	50	1.0
93		50	50		1.0
94	50		50		1.0
95		50		50	1.0
98			50	50	1.0
101	50			50	1.0
102		50		50	1.0
104		50	50		1.0
105	50	50			1.0