SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53702

Length: 378 nt

UniGene Fasta

>sp_v2.0_unigene53702
CGTCGTGACCTTGGCTGTCACTCAACTCCTCTGGTTTACCTGCCTGCCCTTCATCTTTTTGTTACTCTTATATCATCTTTTTGTTACTCTTATATCGATCTTATCTGCCTGTCTATCCCATTCATCCAAATCCACATTCCAATGGCAGACCAAACAATCCGCAACAGTGGCAAGGCTTCTGGTGCTTCCTCCTCCTCCACGGCCTCATGTTCTTCCCTGATTTCTTATAACAGCTACGATGTTTTTATCAATCATCGTGGCCCTGACGTAAAGACCACCTTCGCCACAGATCTATACCGTAGTCTTAATTCCCGTGGACTGCGAGTTTTTCTGGACAAACCGGAACTGGAAGTTGGGCAAAATATTACTCCTCTTCGC

Ace file of the UniGene sp_v2.0_unigene53702

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR-NBS-LRR protein n=1 Tax=Pinus monticola RepID=E9NZS6_PINMO	-	-	1.0e-08	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	tir-nbs-lrr resistance protein	-	-	4.16064e-15	74%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Distance to subject end: 482 aas, your sequence is shorter than subject: 79 - 565

Fln protein: MADQTIRNSGKASGASSSSTASCSSLISYNSYDVFINHRGPDVKTTFATDLYRSLNSRGLRVFLDKPELEVGQNITPLR

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCCTCTGGTTTACCTGCCTGCCCTTCATCTTTTTGTTACTCTTATATCATCTTTTTGTTACTCTTATATCGATCTTATCTGCCTGTCTATCCCATTCATCCAAATCCACATTCCA_-_ATGGCAGACCAAACAATCCGCAACAGTGGCAAGGCTTCTGGTGCTTCCTCCTCCTCCACGGCCTCATGTTCTTCCCTGATTTCTTATAACAGCTACGATGTTTTTATCAATCATCGTGGCCCTGACGTAAAGACCACCTTCGCCACAGATCTATACCGTAGTCTTAATTCCCGTGGACTGCGAGTTTTTCTGGACAAACCGGAACTGGAAGTTGGGCAAAATATTACTCCTCTTCGC

Fln Alignment:

AllPineV4_c53336___YDVFINHRGPDVKTTFATDLYRSLNSRGLRVFLDKPELEVGQNITP
B8LLN9_______________YDVFINHRGPDVKNTFASDLYCRLRSHGMRVFLDKPEMKVGHKITP

SSRs (tot: 1)

Start position	End position	Sequence	Length
187	198	TCC TCC TCC TCC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain