SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53691

Length: 336 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene53691
AAATCTCATCAAGCTTGTAAAGAATGGTCAATTGGAGATTGTTGGAGGTGGTTGGGTAATGAACGATGAGGCCAATTCTCATTACTTTGCGATCATTGAGCAGTTGATGGAAGGTAATTTGTGGTTGAAAGATACAATCGGTGTTGTACCAAAGAATGCTTGGGCAATAGATCCCTTTGGTCACTCACCCACAATGGCATATTTGCTTCGTCGAATGGGTTTTAATAATATGCTTATTCAGAGAACTCATTATGAGGTGAAGAAGGATTAGCATTGCATGAAAATTTGGAGTTTATGTGGCGGCAAAGTTGGGACAGTGATGAAAGTACTGATATC

Ace file of the UniGene sp_v2.0_unigene53691

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-mannosidase II [Arabidopsis thaliana] emb\|CAC01814.1\| alpha-mannosidase-like protein [Arabidopsis thaliana] gb\|AAY90120.1\| Golgi alpha-mannosidase II [Arabidopsis thaliana] gb\|AED92095.1\| alpha-mannosidase II [Arabidopsis thaliana]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	89%
Blast2go	golgi alpha-mannosidase ii	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alpha-mannosidase.	EC:3.2.1.24	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation	GO:0006487	Biological Process	92%
Blast2go	alpha-mannosidase activity	GO:0004559	Molecular Function	92%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HV68

Fln msg: Overlapping hits, possible frame ERROR between 268 and 268, Distance to subject end: 833 aas, your sequence is shorter than subject: 112 - 1149

Fln protein: NLIKLVKNGQLEIVGGGWVMNDEANSHYFAIIEQLMEGNLWLKDTIGVVPKNAWAIDPFGHSPTMAYLLRRMGFNNMLIQRTHYEVKKxxALHENLEFMWRQSWDSDESTDI

Protein Length: 113

Fln nts: AAATCTCATCAAGCTTGTAAAGAATGGTCAATTGGAGATTGTTGGAGGTGGTTGGGTAATGAACGATGAGGCCAATTCTCATTACTTTGCGATCATTGAGCAGTTGATGGAAGGTAATTTGTGGTTGAAAGATACAATCGGTGTTGTACCAAAGAATGCTTGGGCAATAGATCCCTTTGGTCACTCACCCACAATGGCATATTTGCTTCGTCGAATGGGTTTTAATAATATGCTTATTCAGAGAACTCATTATGAGGTGAAGAAGxxxxxxGCATTGCATGAAAATTTGGAGTTTATGTGGCGGCAAAGTTGGGACAGTGATGAAAGTACTGATATC

Fln Alignment:

AllPineV4_c53321___LVKNGQLEIVGGGWVMNDEANSHYFAIIEQLMEGNLWLKDTIGVVPKNAWAIDPFGHSPTMAYLLRRMGFNNMLIQRTHYEVKKDLALHENLEFMWRQSWDSDESTDI
F6HV68_______________LVKNGQLEIVGGGWVMNDEANSHYFAIIEQITEGNMWLNDTIGVVPKNSWAIDPFGYSPTMAYLLRRMGFENMLIQRTHYELKKELSWHKNLEYIWRQSWDAEESTDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain