SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53519

Length: 310 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene53519
GTTATCCGTTACTTCCCGACGCAGGCTTTGAACTTCGCCTTCAAGGATTATTTCAAGTCCTTGTTTGGTTTCAAGAAGAATGAGGGTTACTGGAGGTGGTTCGCTGGCAACGTCGCCTCCGGTGGTGCTGCTGGTGCCTCTTCTTTACTCTTCGTCTACTCGCTCGACTACGCCCGTACCCGTCTTGCTAATGACGCCAAGTCTGCGAAGGGTGGAGGAGACCGCCAGTTCAATGGTCTCGTTGATGTCTACCGCAAGACCCTCAAGTCTGACGGTATTGCCGGTCTCTACCGTGGCTTTGTCCCCTCGG

Ace file of the UniGene sp_v2.0_unigene53519 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP:ADP antiporter n=1 Tax=Piriformospora indica RepID=C0LEE6_PIRIN	-	-	1.4013e-45	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	eukaryotic adp atp carrier	-	-	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 103 - 390

Fln protein: VIRYFPTQALNFAFKDYFKSLFGFKKNEGYWRWFAGNVASGGAAGASSLLFVYSLDYARTRLANDAKSAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGFVPS

Protein Length: 104

Fln nts: GTTATCCGTTACTTCCCGACGCAGGCTTTGAACTTCGCCTTCAAGGATTATTTCAAGTCCTTGTTTGGTTTCAAGAAGAATGAGGGTTACTGGAGGTGGTTCGCTGGCAACGTCGCCTCCGGTGGTGCTGCTGGTGCCTCTTCTTTACTCTTCGTCTACTCGCTCGACTACGCCCGTACCCGTCTTGCTAATGACGCCAAGTCTGCGAAGGGTGGAGGAGACCGCCAGTTCAATGGTCTCGTTGATGTCTACCGCAAGACCCTCAAGTCTGACGGTATTGCCGGTCTCTACCGTGGCTTTGTCCCCTCGG

Fln Alignment:

AllPineV4_c53116___VIRYFPTQALNFAFKDYFKSLFGFKKN-EGYWRWFAGNVXXXXXXXXXSLLFVYSLDYARTRLANDAKSAKGGGDRQFNGLVDVYRKTLKSDGIAGLYRGF
A9NVC6_______________VIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDSKAAKKGGERQFNGLVDVYKKTLKSDGVAGLYRGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain