SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53048

Length: 242 nt

UniGene Fasta

>sp_v2.0_unigene53048
TTCTACATAGCAGGTGAAAGTTATGCAGGATATTTCGTTCCAGAATTGGCTGCAACCATTTTAGACCATCAGAAGTTGAAGCAGGGATCGTTCATTAATTTGAAAGGAGTAATAGTGGGGAATGGCCTATTGAATGCTCCTACAGATTATGTTGGGACTTTCACATACCCGTGGACACATGCAATAATATCGGATGAAAGTTATGAACGACTAGTTGGCAACTGCACCAAAGCAAATTACGA

Ace file of the UniGene sp_v2.0_unigene53048

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0794500 protein n=4 Tax=Oryza sativa RepID=Q6K673_ORYSJ	-	-	3.0e-17	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	carboxypeptidase d	-	-	8.35399e-33	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	8.35399e-33	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	8.35399e-33	72%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	8.35399e-33	72%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	8.35399e-33	72%
Blast2go	extracellular space	GO:0005615	Cellular Component	8.35399e-33	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLR6

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 80 - 535

Fln protein: FYIAGESYAGYFVPELAATILDHQKLKQGSFINLKGVIVGNGLLNAPTDYVGTFTYPWTHAIISDESYERLVGNCTKANY

Protein Length: 81

Fln nts: TTCTACATAGCAGGTGAAAGTTATGCAGGATATTTCGTTCCAGAATTGGCTGCAACCATTTTAGACCATCAGAAGTTGAAGCAGGGATCGTTCATTAATTTGAAAGGAGTAATAGTGGGGAATGGCCTATTGAATGCTCCTACAGATTATGTTGGGACTTTCACATACCCGTGGACACATGCAATAATATCGGATGAAAGTTATGAACGACTAGTTGGCAACTGCACCAAAGCAAATTACGA

Fln Alignment:

AllPineV4_c52551___FYIAGESYAGYFVPELAATILDHQKLKQGSFINLKGVIVGNGLLNAPTDYVGTFTYPWTHAIISDESYERLVGNCTKAN
B8LLR6_______________FYIAGESYAGNYIPELAATILHHQRLSQASFINFKGIMVGNGIMNSDTDNIGQITYPWTHALISDETYEGLINNCIKSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain