SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene53031

Length: 138 nt

UniGene Fasta

>sp_v2.0_unigene53031
GCATTCTGATTCCCAGGTTTTGCCTACTTTGTCAGGACTGACAATCGCAAGGAAAAGAAGAGTCCTTGCACAGTTTGATGATTTACAAGAGTGCTACTTGCAAAAGAGGCGACGCTGGGCCACTCAATTACGAAAACA

Ace file of the UniGene sp_v2.0_unigene53031

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	ubiquitin ligase protein	-	-	1.94892e-09	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	1.94892e-09	77%
Blast2go	identical protein binding	GO:0042802	Molecular Function	1.94892e-09	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P43254

Fln msg: Distance to subject end: 352 aas, your sequence is shorter than subject: 45 - 675

Fln protein: HSDSQVLPTLSGLTIARKRRVLAQFDDLQECYLQKRRRWATQLRK

Protein Length: 46

Fln nts: GCATTCTGATTCCCAGGTTTTGCCTACTTTGTCAGGACTGACAATCGCAAGGAAAAGAAGAGTCCTTGCACAGTTTGATGATTTACAAGAGTGCTACTTGCAAAAGAGGCGACGCTGGGCCACTCAATTACGAAAACA

Fln Alignment:

AllPineV4_c52532___SDSQVLPTLSGLTIARKRRVLAQFDDLQECYLQKRRRWATQ
P43254_______________SDSQSL-NQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain