SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene52409

Length: 290 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene52409
CGTCGTGACCTTGGCTGTCACTCAAGGTTCTTATTTTAGATGAGGCAGATAGGCTATTGGATATGGGTTTTCAGAAACAGTTGTCATCCATTATAGGCCGTTTACCAAAGCAACGGCGGACAGGACTTTTTTCTGCTACCCAGACCGAGGCAGTTGAAGAGCTTTCAAGAGCTGGGCTTAGGAACCCAGTGAGGGTTGAAGTCAGAGTAGAAGCAAAATCTAAGATTCGATCATCCACTATGACTGATATGGTTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTAT

Ace file of the UniGene sp_v2.0_unigene52409

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 18 [Arabidopsis thaliana] sp\|Q9FLB0.1\|RH18_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 18 dbj\|BAB09988.1\| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana] gb\|AED90875.1\| DEAD-box ATP-dependent	-	-	9.0e-27	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	dead-box atp-dependent rna helicase 18-like	-	-	6.30339e-35	82%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Ribosomal protein L34e, conserved site	IPR018065	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 418 aas, your sequence is shorter than subject: 96 - 802

Fln protein: S*PWLSLKVLILDEADRLLDMGFQKQLSSIIGRLPKQRRTGLFSATQTEAVEELSRAGLRNPVRVEVRVEAKSKIRSSTMTDMVCSRTPEGLHIEY

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGTTCTTATTTTAGATGAGGCAGATAGGCTATTGGATATGGGTTTTCAGAAACAGTTGTCATCCATTATAGGCCGTTTACCAAAGCAACGGCGGACAGGACTTTTTTCTGCTACCCAGACCGAGGCAGTTGAAGAGCTTTCAAGAGCTGGGCTTAGGAACCCAGTGAGGGTTGAAGTCAGAGTAGAAGCAAAATCTAAGATTCGATCATCCACTATGACTGATATGGTTTGCTCGAGGACACCTGAAGGGCTTCACATTGAGTAT

Fln Alignment:

AllPineV4_c51792___LKVLILDEADRLLDMGFQKQLSSIIGRLPKQRRTGLFSATQTEAVEELSRAGLRNPVRVEVRVEAKSKIRSSTMTDMVCSRT
B8LKW8_______________VQFLVLDEADQMLAVGFEEDVEIILDNLPAERQSMLFSATMPGWVKKLSRKHLNNPMTIDLVGENEEKLAEGIKLYAVATTT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain