SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51650

Length: 304 nt

UniGene Fasta

>sp_v2.0_unigene51650
CGTCGTGACCTTGGCTGTTGCTGGAGCTTTTCTTCATGGAGTTGAAGATGAATTCTCAGAGGTTCGTATAGCTACCATTGACACTTTGATAAGGCTCAGTGGATTCTCTAAGAAATTTGCTGATAATGCACTGGACTTATTGATGGATATGTTGAATGATGATTCTACGGAGGTTCGCATGCATACCTTGCATGGTTTGCTACACATGGCTCATGTTAACCATTCGACAGTGCAGGAAAAACACATGCATATGTTTCTTGGTATGTTTGACGATATCAACTCTGATATACGTTCTGCAGCAAGG

Ace file of the UniGene sp_v2.0_unigene51650

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	integrator complex subunit 4 [Arabidopsis thaliana] gb\|AAL38305.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74681.1\| integrator complex subunit 4 [Arabidopsis thaliana]	-	-	1.0e-06	35%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice).	-	-	0.0	54%
Blast2go	integrator complex subunit 4	-	-	9.92815e-16	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	snRNA processing	GO:0016180	Biological Process	9.92815e-16	64%
Blast2go	protein binding	GO:0005515	Molecular Function	9.92815e-16	64%
Blast2go	integrator complex	GO:0032039	Cellular Component	9.92815e-16	64%

Source	InterPros	Term	Type	Identity
Sma3	Copper type II, ascorbate-dependent monooxygenase, N-terminal	IPR000323	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9F7D6

Fln msg: Distance to subject end: 506 aas, your sequence is shorter than subject: 101 - 791

Fln protein: VVTLAVAGAFLHGVEDEFSEVRIATIDTLIRLSGFSKKFADNALDLLMDMLNDDSTEVRMHTLHGLLHMAHVNHSTVQEKHMHMFLGMFDDINSDIRSAAR

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTTGCTGGAGCTTTTCTTCATGGAGTTGAAGATGAATTCTCAGAGGTTCGTATAGCTACCATTGACACTTTGATAAGGCTCAGTGGATTCTCTAAGAAATTTGCTGATAATGCACTGGACTTATTGATGGATATGTTGAATGATGATTCTACGGAGGTTCGCATGCATACCTTGCATGGTTTGCTACACATGGCTCATGTTAACCATTCGACAGTGCAGGAAAAACACATGCATATGTTTCTTGGTATGTTTGACGATATCAACTCTGATATACGTTCTGCAGCAAGG

Fln Alignment:

AllPineV4_c50916___AGAFLHGVEDEFSEVRIATIDTLIRLSGFSKKFXXXXXXXXXXXXXXXSTEVRMHTLHGLLHMAHVNHSTVQEKHMHMFLGMFDDINSDIRSAAR
B9F7D6_______________AGIFAHGIEDEFHQVRTAACKSLGALSKLSAQYAQKALDLLMGMMNDDTEAVRLQTLQALFHMATYGCLTVQEMHMHMFLGLLVDMNASIRDATR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain