SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51584

Length: 360 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51584
AAAGTGTACAGACTTCTCCAAAGAATGAATCCTCTGCAGCAACATCTCTAATCACTGAGCTGCGTTCATCTTGTGGAAGACTTGATATAATTGAGGCAAATTCCTTCAAGGACAGAGAAGACATGGAAGATAAGTCCCAATGGCAGTTAATGCCTCTTGAAAAATCAAGAGGTTCAAAAGGACCTAGGCATGAGCTTAGTCAAGCAGTGGAGGGAGTTTTAGCAGGGTCCATTAGACGAGAAATGGCCCTGGAAGAGGTTTGCAACAAGCAAGCGACAGAAATTGAGCACCTTAACCGTTTGGTTAGACAATACAAACATGAACGAGAATGTAATTCCATCATACAGCAAGCTAGAGAGG

Ace file of the UniGene sp_v2.0_unigene51584

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phragmoplast-associated kinesin-related protein [Arabidopsis thaliana] gb\|AAM74514.1\| AT3g23670/MDB19_16 [Arabidopsis thaliana] gb\|AAN16470.1\| phragmoplast-associated kinesin-related protein 1-like protein [Arabidopsis thaliana] gb\|AAN16471.1\| ph	-	-	6.0e-22	49%
FL-Next	tr=PAKRP1L; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	50%
Blast2go	phragmoplast-associated kinesin-related protein 1	-	-	4.14232e-26	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Plus-end-directed kinesin ATPase.	EC:3.6.4.4	-	4.14232e-26	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	microgametogenesis	GO:0055046	Biological Process	4.14232e-26	70%
Blast2go	phragmoplast assembly	GO:0000914	Biological Process	4.14232e-26	70%
Blast2go	plus-end-directed microtubule motor activity	GO:0008574	Molecular Function	4.14232e-26	70%
Blast2go	phragmoplast	GO:0009524	Cellular Component	4.14232e-26	70%

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7L3F7

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 119 - 1310

Fln protein: SVQTSPKNESSAATSLITELRSSCGRLDIIEANSFKDREDMEDKSQWQLMPLEKSRGSKGPRHELSQAVEGVLAGSIRREMALEEVCNKQATEIEHLNRLVRQYKHERECNSIIQQARE

Protein Length: 120

Fln nts: AAAGTGTACAGACTTCTCCAAAGAATGAATCCTCTGCAGCAACATCTCTAATCACTGAGCTGCGTTCATCTTGTGGAAGACTTGATATAATTGAGGCAAATTCCTTCAAGGACAGAGAAGACATGGAAGATAAGTCCCAATGGCAGTTAATGCCTCTTGAAAAATCAAGAGGTTCAAAAGGACCTAGGCATGAGCTTAGTCAAGCAGTGGAGGGAGTTTTAGCAGGGTCCATTAGACGAGAAATGGCCCTGGAAGAGGTTTGCAACAAGCAAGCGACAGAAATTGAGCACCTTAACCGTTTGGTTAGACAATACAAACATGAACGAGAATGTAATTCCATCATACAGCAAGCTAGAGAGG

Fln Alignment:

AllPineV4_c50827___VQTSPKNESSAATSLITELRSSCGRLDIIEANSFKDREDMEDKSQWQLMPLEKSRGSKGPRHELSQAVEGVLAGSIRREMALEEVCNKQATEIEHLNRLVRQYKHERECNSIIQQARE
D7L3F7_______________VQTYPEGDTVAEDNPKEVLCSKC------KCRAECDAQEISDTSNLQLVPIDNSEGSEKSNFQVPKAVEKVLAGSIRREMAMEEVCTKQASEISQLNRLVQQYKHERECNAIIGQTRE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain