SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51522

Length: 328 nt

UniGene Fasta

>sp_v2.0_unigene51522
ATAGGACCGGGGATTGATTTACCCATACAGCGGCTTTACACGCAGGATCGCCGCACCGGGTGCGGCACGCCGCCGGCTTCAAAAACTGCAGTCGAAGCCATGCCGGTCGTGACGTTTGGTGTCACCATCTCCCTCTGGAATGTGCCGTCTGCAGAGATGAGGTTGAACTGGGCGAGGTGTTGCGTCAGATGCCATGTCAGCACATGTACCACTCGCGCTGTATTCTGCCGTGGCTGGAATTGCACAGCTCCTGCCCACTCTGCCGCTTCGAGATGCCCGCCGTCGGTGCCTGGACGTCCGAACAGGGCAGCCAGAGGATCCACGTCGG

Ace file of the UniGene sp_v2.0_unigene51522

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/U-box domain-containing protein [Arabidopsis thaliana] dbj\|BAB11261.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL36261.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14133.1\| unknown protein [Arabidopsis thaliana] gb\|AED96751.1\| RING/U-bo	-	-	5.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	protein	-	-	3.1799e-22	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1117	IPR010543	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU7

Fln msg: Separated hits, possible frame ERROR between 111 and 138, Distance to subject end: 157 aas, your sequence is shorter than subject: 109 - 451

Fln protein: IGPGIDLPIQRLYTQDRRTGCGTPPASKTAVEAMPVxxxxxxxxxxECAVCRDEVELGEVLRQMPCQHMYHSRCILPWLELHSSCPLCRFEMPAVGAWTSEQGSQRIHV

Protein Length: 110

Fln nts: ATAGGACCGGGGATTGATTTACCCATACAGCGGCTTTACACGCAGGATCGCCGCACCGGGTGCGGCACGCCGCCGGCTTCAAAAACTGCAGTCGAAGCCATGCCGGTCGTxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAATGTGCCGTCTGCAGAGATGAGGTTGAACTGGGCGAGGTGTTGCGTCAGATGCCATGTCAGCACATGTACCACTCGCGCTGTATTCTGCCGTGGCTGGAATTGCACAGCTCCTGCCCACTCTGCCGCTTCGAGATGCCCGCCGTCGGTGCCTGGACGTCCGAACAGGGCAGCCAGAGGATCCACGTCGG

Fln Alignment:

AllPineV4_c50753___IGPGIDLPIQRLYTQDRRTGCGTPPASKTAVEAMPVVxxxxxxxxxECAVCRDEVELGEVLRQMPCQHMYHSRCILPWLELHSSCPLCRFEMP
B8LPU7_______________LGPGLDQLIQQLAENDPNR-YGTPPASKASIGTMPTIxxxxxxxxxQCAVCKDEFEVGTEVRQMPCKHMYHSVCILPWLEQHNSCPVCRYEMP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain