SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51487

Length: 359 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51487
AAGGCCTTAATAATTTTAGACGACGTAGATAACGAGACTCAAGTGAATGCGCTTTGGCCGGTTCACACAGATCTCCACTCTGACAGTTTAATATTGATTACATCTCGGAACACAGATGTTCTCATAAGGTCACGAGTGGAAGGGTCATTAATATATACCCTGACAGGCCTTAATGTAAAATACTCTAGGAAACTCTTTTGCTGGCATTCCTGCAGGCAGCCAGATCCACCCGAAGGATTTGAATCTCTTGTGGATAAGTATGTAGACGCCTGTGATGGTTTGCCCCTATCTCTGAAAGTGTTTGGGGCACTTGTGTATGGAAAAGAGATGGGTTATTGGACAGAACAATTGGATAGACT

Ace file of the UniGene sp_v2.0_unigene51487

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Resistance gene homolog, . (Fragment) n=1 Tax=Pinus radiata RepID=O49121_PINRA	-	-	5.0e-32	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	resistance gene region between conserved kinase-2 and p-loop domains	-	-	8.75533e-40	71%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 625 aas, your sequence is shorter than subject: 119 - 1071

Fln protein: KALIILDDVDNETQVNALWPVHTDLHSDSLILITSRNTDVLIRSRVEGSLIYTLTGLNVKYSRKLFCWHSCRQPDPPEGFESLVDKYVDACDGLPLSLKVFGALVYGKEMGYWTEQLDR

Protein Length: 120

Fln nts: AAGGCCTTAATAATTTTAGACGACGTAGATAACGAGACTCAAGTGAATGCGCTTTGGCCGGTTCACACAGATCTCCACTCTGACAGTTTAATATTGATTACATCTCGGAACACAGATGTTCTCATAAGGTCACGAGTGGAAGGGTCATTAATATATACCCTGACAGGCCTTAATGTAAAATACTCTAGGAAACTCTTTTGCTGGCATTCCTGCAGGCAGCCAGATCCACCCGAAGGATTTGAATCTCTTGTGGATAAGTATGTAGACGCCTGTGATGGTTTGCCCCTATCTCTGAAAGTGTTTGGGGCACTTGTGTATGGAAAAGAGATGGGTTATTGGACAGAACAATTGGATAGACT

Fln Alignment:

AllPineV4_c50712___KALIILDDVDNETQVNALWPVHTD-LHSDSLILITSRNTDVLIRSRVEGSLIYTLTGLNVKYSRKLFCWHSCRQPDPPEGFESLVDKYVDACDGLPLSLKVFGALVYGKEMGYWTEQLDR
C0PQE2_______________RALIVLDDVDDISQLDALFASLKDTIHVDSLILVTSRNKDVLTSSGITESSIYRLKGLNRKHSQELFCFHAFGQPHPVVGFEEVVEKFLDVCDGLPLSLKVLGALLHGKDLWYWKEQLGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain