SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51484

Length: 1417 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene51484 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana] gb\|AAL08296.1\| At1g60710/F8A5_23 [Arabidopsis thaliana] gb\|AAM20506.1\| auxin-induced protein, putative [Arabidopsis thaliana] gb\|AAN15570.1\| auxin-induced protein, putative [Arabidopsis thal	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	auxin-induced protein pcnt115 isoform 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	87%
Blast2go	sucrose induced translational repression	GO:0080149	Biological Process	87%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	87%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK40

Fln msg:

Fln protein: MAQLAAAASTVRRLRLGSQGLEVSAQGLGCMGMSAFYGPPKPDDEMISLIHHAVSRGITFLDTSDIYGPFTNEILIGKAIKGIRDKVQLATKFGISYPDGKREVRGDPAYVRACCEASLKRLDVECIDLYYQHRIDTRVPIEVTIGELKKLVEEGKVKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDVEEEIIPTCRELGIGIVPYCPLGQGFFCAGAKLVENLADNDFRKELPRLRAENLEKNKVLFERICEIASRKGCSPSQLALAWVQHQGNDVVPIPGTTKVKNLEENIGALFVELTAVEMKELEDLVSSVGVFGDRFFDVNFTWLNSETPPLSSGEASV*

Protein Length: 351

Fln nts: ATGGGGGACATCATCAATCCCTGTAGAGGCAGATGAAGCAGAGTAATCTCTAGACACAGTCCACAGCCTTGGAATGAATATACCCCAAAGAACAACATTTGCAGTGACTGGGAGACCGGGATTAGAGTGATCGCGTAACAGAGAA_-_ATGGCGCAATTAGCAGCAGCAGCATCCACAGTGCGTAGATTGCGTTTGGGGTCTCAAGGACTTGAAGTATCGGCGCAGGGGTTGGGTTGCATGGGCATGTCTGCTTTCTATGGCCCTCCAAAGCCCGACGACGAAATGATATCTCTCATCCACCATGCTGTCTCCAGGGGCATCACTTTTCTGGACACTTCAGACATTTATGGCCCTTTTACCAACGAAATCCTCATTGGAAAGGCTATTAAAGGGATAAGAGACAAAGTCCAATTAGCTACAAAGTTTGGAATCAGCTATCCAGATGGAAAACGGGAGGTCCGAGGAGATCCTGCATATGTTCGCGCCTGCTGCGAGGCAAGCTTGAAGAGACTGGATGTAGAGTGCATTGATCTTTATTACCAACATCGTATTGACACAAGAGTCCCTATTGAAGTCACGATTGGAGAACTGAAGAAATTAGTGGAAGAAGGGAAAGTAAAATACATTGGACTTTCTGAGGCTTCTGCATCAACAATTCGAAGAGCTCATGCTGTTCATCCTATAACAGCAGTTCAGATAGAGTGGTCTTTGTGGACTAGGGATGTAGAGGAAGAAATTATTCCAACTTGCAGGGAGCTTGGCATTGGAATTGTGCCATATTGCCCTCTAGGCCAGGGTTTCTTTTGTGCTGGAGCAAAGTTAGTTGAGAATTTAGCAGATAATGATTTCAGAAAGGAGCTGCCCAGGTTAAGAGCAGAAAATCTTGAAAAGAACAAGGTTCTGTTTGAAAGGATATGTGAAATAGCTAGCAGGAAAGGGTGCTCCCCCTCCCAATTGGCACTTGCTTGGGTTCAACATCAGGGAAATGATGTGGTGCCAATACCTGGAACAACCAAAGTGAAAAACTTGGAAGAGAACATAGGTGCTCTCTTTGTTGAGCTTACAGCGGTGGAGATGAAGGAATTAGAAGATTTGGTGTCGTCAGTTGGTGTCTTTGGAGATCGATTTTTTGACGTGAATTTTACATGGCTCAACTCAGAAACGCCCCCTTTGTCTTCAGGGGAAGCATCAGTGTAA___TGCTTTTTAAATCTGTCAAATATAGGTGCTTTTACTACTTAAAAATAAATAGATATGGAGATGCTATTTGTGTGTTTTTAGAAAAGTATTGACGTAACATCTACCTCTTTGTATTGTAAAGAAAAACTTATTACCTGGCCAGTTATATTTCCTTCGAGAGATGATCTTTGTATTTTAAAGAAATATTCTTAGATGGTTGGGATACTACATTTACTAGTTTTA

Fln Alignment:

AllPineV4_c50708___MAQLAAAASTVRRLRLGSQGLEVSAQGLGCMGMSAFYGPPKPDDEMISLIHHAVSRGITFLDTSDIYGPFTNEILIGKAIKGIRDKVQLATKFGISYPDGKREVRGDPAYVRACCEASLKRLDVECIDLYYQHRIDTRVPIEVTIXXXXXXXXXXXXKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDVEEEIIPTCRELGIGIVPYCPLGQGFFCAGAKLVENLADNDFRKELPRLRAENLEKNKVLFERICEIASRKGCSPSQLALAWVQHQGNDVVPIPGTTKVKNLEENIGALFVELTAVEMKELEDLVSSVGVFGDRFFDVNFTWLNSETPPLSSGEASV
A9NK40_______________MAKLAAA-STVRTVRLGSQGLEVSAQGLGCMGMSSFYGPPKPDQEMITLIHHAVSSGITFLDTSDIYGPFTNEVLVGKAIKEIREKVQLATKFGISFADGKREIRGDPAYVRASCEASLKRLDVDCIDLYYQHRIDTRVPIEVTIGEMKKLVEEGKIKYIGLSEASASTIRRAHAVHPITAVQIEWSLWTRDVEEAIIPTCRELGIGIVPYSPLGRGFLSIGAKLVDNLADNDFRKLMPRFSAENLEKNKVIFERICEIASKKGCSPSQLALAWVHHQGNDVAPIPGTTKVKNLEENIGALSVELTPLETKEIEDLVSSAGVFGDRYGDMDFTWMNSETPPLSSWQATV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
240	50	50			1.0
368	87	12			0.992554
1030		16		83	0.994512
1323		16	66	8	0.999991
1328		10		90	0.903175
1329		11	88		0.92373
1330	11			88	0.92373
1331		11		88	0.92373
1351		20		80	0.995493
1352		20		80	0.995493
1356	80			20	0.995498
1381	66	33			0.997455
1383		33		66	0.997454
1387	33		66		0.997453
1388	33	66			0.997453

SSRs (tot: 1)

Start position	End position	Sequence	Length
1249	1261	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain