SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51372

Length: 414 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51372
TTTAGTAGTTGTCAAAATAACCGCTTGTCTGGACCTGTTTCAAATGGACTGTGGGGGCTTCCTCGTCTGACTATTTTGGAAATTTCAAGCAATTTTTTCAATGGATCAATACCTCCTGACATTGGAAGAGCTGCCAATCTTCAAAACCTTCTGGTTGCTCACACTCAGATAAGTGGAAGCCTGCCAAAGGAATTGGGCTTCTGCTCAAACTTGAATACCTTGCATTTAGATGCAAACAAGCTCACAGGTGAGATTCCTAGTTCGTTTGGTTCTCTTGGTTCTTTAATTGAATTGAGCTTGGCGAATAATCAACTTACAGGAAATATCCCAGACACTTTTGGAAAGCTGCAGCAACTTATTAGTCTTGACCTTTCTCATAATTCATTGGAAGGCAATATTCCAAGCAGCTTTGCT

Ace file of the UniGene sp_v2.0_unigene51372

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR_4 domain containing protein	-	-	9.0e-05	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	receptor protein kinase clavata1	-	-	9.23581e-34	61%

Source	InterPros	Term	Type	Identity
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 299 aas, your sequence is shorter than subject: 138 - 551

Fln protein: FSSCQNNRLSGPVSNGLWGLPRLTILEISSNFFNGSIPPDIGRAANLQNLLVAHTQISGSLPKELGFCSNLNTLHLDANKLTGEIPSSFGSLGSLIELSLANNQLTGNIPDTFGKLQQLISLDLSHNSLEGNIPSSFA

Protein Length: 139

Fln nts: TTTAGTAGTTGTCAAAATAACCGCTTGTCTGGACCTGTTTCAAATGGACTGTGGGGGCTTCCTCGTCTGACTATTTTGGAAATTTCAAGCAATTTTTTCAATGGATCAATACCTCCTGACATTGGAAGAGCTGCCAATCTTCAAAACCTTCTGGTTGCTCACACTCAGATAAGTGGAAGCCTGCCAAAGGAATTGGGCTTCTGCTCAAACTTGAATACCTTGCATTTAGATGCAAACAAGCTCACAGGTGAGATTCCTAGTTCGTTTGGTTCTCTTGGTTCTTTAATTGAATTGAGCTTGGCGAATAATCAACTTACAGGAAATATCCCAGACACTTTTGGAAAGCTGCAGCAACTTATTAGTCTTGACCTTTCTCATAATTCATTGGAAGGCAATATTCCAAGCAGCTTTGCT

Fln Alignment:

AllPineV4_c50568___SSCQNNRLSGPVSNGLWGLPRLTILEISSNFFNGSIPPDIGRAANLQNLLVAHTQISGSLPKELGFCSNLNTLHLDANKLTGEIPSSFGSLGSLIELSLANNQLTGNIPDTF-GKLQQLISLDLSHNSLEGNIPSSFA
B8LRW5_______________SLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSIPASFGNMSSLKNFSLGYNQLHGSIPSELGRLSQLNALYLHHNYFSGQIPPSLSNCTLLLDLQLHANQLTGHIPWEFGGRLSQLENLFLWGNKLRGEIPKTLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain