SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51165

Length: 490 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51165
CTAGAGCACCTTCTGCAATTGATAATAAAGACTGGATAATAGGTTCCCTTCTGATAATTGCGGCCACTCTTGCTTGGTCGGCCTTGTTCATCCTGCAGGCTGCAGTACTCAAGAAATATTCTGCTCAACTATCACTTGCCACCTTAATATGTTTTCTAGGGACATTACAGGCAACAACTCTGAGCTTAGCTGTTGTGCGTGATTCTTCCCAGTGGGCTTTAGGATGGGACATCAAGCTTCTCACGGCAGTCTACTCTGGAGTGGTGGCGTCAGCAATTGCTTATTACGTACAAGGGTTGTGCATGCGCGTAAAAGGACCTGTATTTGCCACAGCTTTCAGTCCGGTGATGATGATAATCGTAGCAATTATGGGCTCTATCATTCTCTCTGAAAGCATCTTTTTTGGGCAGTGTGTTGGGAGGCGTTATGATCGCAACAGGGCTCTACACTGTTCTGTGGGGAAAATTGAAGGATAGCAAGATCTCAGAGC

Ace file of the UniGene sp_v2.0_unigene51165

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] dbj\|BAB11163.1\| MtN21 nodulin protein-like [Arabidopsis thaliana] gb\|AED91102.1\| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	nodulin-like protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWT4

Fln msg: Overlapping hits, possible frame ERROR between 419 and 400, Distance to subject end: 59 aas, your sequence is shorter than subject: 163 - 392

Fln protein: RAPSAIDNKDWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFLGTLQATTLSLAVVRDSSQWALGWDIKLLTAVYSGVVASAIAYYVQGLCMRVKGPVFATAFSPVMMIIVAIMGSIILSESIxxxxxxxxGVMIATGLYTVLWGKLKDSKISE

Protein Length: 164

Fln nts: CTAGAGCACCTTCTGCAATTGATAATAAAGACTGGATAATAGGTTCCCTTCTGATAATTGCGGCCACTCTTGCTTGGTCGGCCTTGTTCATCCTGCAGGCTGCAGTACTCAAGAAATATTCTGCTCAACTATCACTTGCCACCTTAATATGTTTTCTAGGGACATTACAGGCAACAACTCTGAGCTTAGCTGTTGTGCGTGATTCTTCCCAGTGGGCTTTAGGATGGGACATCAAGCTTCTCACGGCAGTCTACTCTGGAGTGGTGGCGTCAGCAATTGCTTATTACGTACAAGGGTTGTGCATGCGCGTAAAAGGACCTGTATTTGCCACAGCTTTCAGTCCGGTGATGATGATAATCGTAGCAATTATGGGCTCTATCATTCTCTCTGAAAGCATCxxxxxxxxxxxxxxxxxxxxxxxxGGCGTTATGATCGCAACAGGGCTCTACACTGTTCTGTGGGGAAAATTGAAGGATAGCAAGATCTCAGAGC

Fln Alignment:

AllPineV4_c50311___APSAIDNKDWIIGSLLIIAATLAWSALFILQAAVLKKYSAQLSLATLICFLGTLQATTLSLAVVRDSSQWALGWDIKLLTAVYSGVVASAIAYYVQGLCMRVKGPVFATAFSPVMMIIVAIMGSIILSESIxxxxxxxGVMIATGLYTVLWGKLKDSKI
A9NWT4_______________AAAAIDNKNWIIGSVLIIAATLAWSGLFILQAAVLKKYSAQLSLATLICFLGTLQATVLSLAVVRDPSQWALGWDLNLLTAVYSGVVASAIAYYVQGLCMRVKGPVFATAFSPLMMIIVAIMASIILAENIxxxxxxxGVLIVIGLYAVLWGKVKDSKI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain