SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51159

Length: 385 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51159
AGCCTTATTGGTCTATGGGGCTGCAAGGGATCGACTACCAAGGTATTCTCAAGCCCTGCTTTGATAATTCCTCGTCTCTCACCTCCGAAGCTGTCTATACGGGCCAGAACTTGACGGTTTCGCTCAGTGGATTCGGATCTGTGTACGAAGGCGTTTTGAAGGACAAGACCGGAGTTGCGGTTAAGAAGCTGGATGGACCGAGACAAGGATACAGGGAATTCAGAGCCGAAGTAGCGACTATCGGTAGCATAAGCCACATGAATCTGGTGAGACTACGGGGTTTCTGCGCCGATTCCCGCCAGAGGCTCCTGGTTTACGAGCTAATGGAGAACGGTTCTCTGGAAAAATGGCTTTTCTCTGGTCGAGACGACAGCAGAGGGTGTCT

Ace file of the UniGene sp_v2.0_unigene51159 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase-like protein (Fragment) n=1 Tax=Corylus avellana RepID=C7A7W5_CORAV	-	-	2.0e-23	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	kinase-like protein	-	-	2.32704e-29	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	2.32704e-29	74%
Blast2go	ubiquitin protein ligase binding	GO:0031625	Molecular Function	2.32704e-29	74%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.32704e-29	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.32704e-29	74%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Long hematopoietin receptor, Gp130 family 2, conserved site	IPR003529	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3		IPR005806	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Cytochrome b6-f complex Fe-S subunit	IPR014909	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 222 aas, your sequence is shorter than subject: 127 - 431

Fln protein: PYWSMGLQGIDYQGILKPCFDNSSSLTSEAVYTGQNLTVSLSGFGSVYEGVLKDKTGVAVKKLDGPRQGYREFRAEVATIGSISHMNLVRLRGFCADSRQRLLVYELMENGSLEKWLFSGRDDSRGC

Protein Length: 128

Fln nts: AGCCTTATTGGTCTATGGGGCTGCAAGGGATCGACTACCAAGGTATTCTCAAGCCCTGCTTTGATAATTCCTCGTCTCTCACCTCCGAAGCTGTCTATACGGGCCAGAACTTGACGGTTTCGCTCAGTGGATTCGGATCTGTGTACGAAGGCGTTTTGAAGGACAAGACCGGAGTTGCGGTTAAGAAGCTGGATGGACCGAGACAAGGATACAGGGAATTCAGAGCCGAAGTAGCGACTATCGGTAGCATAAGCCACATGAATCTGGTGAGACTACGGGGTTTCTGCGCCGATTCCCGCCAGAGGCTCCTGGTTTACGAGCTAATGGAGAACGGTTCTCTGGAAAAATGGCTTTTCTCTGGTCGAGACGACAGCAGAGGGTGTCT

Fln Alignment:

AllPineV4_c50301___TSEAVYTGQNLTVSLSGFGSVYEGVLKDKTGVAVKKL-DGPRQGYREFRAEVATIGSISHMNLVRLRGFCADSRQRLLVYELMENGSLEKWLF
A9NM60_______________TIEIATGGFSKEIGKGGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain