SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51133

Length: 458 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene51133
ATGGGGTGCAGGGCCAGAACCAGATCTTCTCTTAGTTTTTGGCTTCACTCGGTGCCTGTTGGGGTTCCCTGCATGGAGGCTTCCATTCACAGAGATCATGTCAGCTATCTCATCATCATTTTATAGTTTTTCTTTGTTGCCTTTAATTTGGATTATGTTCCTCGTTGTCCTTAATTTGGATTATATTATGCAGCTGAATATTGCATAAACCTGGTAGAGATCAATTGCCGTCCAGTTAAGATTTAGGAATGGGCAAAGCCTTTACTCAGTGCTAGTTGTGGCCCTTCACACATCATTGAAATATGGAATCACTATACATGAATCATGTGTACAGAGCCTTCACACTACAAAGGTTGTTACAGGACAGGGGTCTCCAATTGTGCAATGCAACTCACAAGAAGAGAACAAAGATCTATGTTGGAGGACAAATTAGTGTGCTTGAAACTTAATATTAAAAG

Ace file of the UniGene sp_v2.0_unigene51133 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like	IPR001441	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK53

Fln msg: your sequence is shorter than subject: 69 - 279

Fln protein: WGAGPEPDLLLVFGFTRCLLGFPAWRLPFTEIMSAISSSFYSFSLLPLIWIMFLVVLNLDYIMQLNIA*

Protein Length: 70

Fln nts: ATGGGGTGCAGGGCCAGAACCAGATCTTCTCTTAGTTTTTGGCTTCACTCGGTGCCTGTTGGGGTTCCCTGCATGGAGGCTTCCATTCACAGAGATCATGTCAGCTATCTCATCATCATTTTATAGTTTTTCTTTGTTGCCTTTAATTTGGATTATGTTCCTCGTTGTCCTTAATTTGGATTATATTATGCAGCTGAATATTGCATAA___ACCTGGTAGAGATCAATTGCCGTCCAGTTAAGATTTAGGAATGGGCAAAGCCTTTACTCAGTGCTAGTTGTGGCCCTTCACACATCATTGAAATATGGAATCACTATACATGAATCATGTGTACAGAGCCTTCACACTACAAAGGTTGTTACAGGACAGGGGTCTCCAATTGTGCAATGCAACTCACAAGAAGAGAACAAAGATCTATGTTGGAGGACAAATTAGTGTGCTTGAAACTTAATATTAAAAG

Fln Alignment:

AllPineV4_c50271___AGPEPDLLLVFGFTRCLLGFPAWRLPFTEIM
B8LK53_______________AGPEPDLLLVFGFTRCLLGFPAWRLPFTEII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain