SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51116

Length: 528 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51116
GATAATCACAACAATAAACGTAGCTTGGGCAGAAGAAAAGAGTATATTAGATTTGTACCTTCAGAGCTTTCGAATTGGTAAAGGGACACAAGAGTTATTGAATTATCTCCTCCTCGTTGCAGTCGACCAAGAAGCATTCAAGCGTTGCCAGCAGATTCATCCGCACTGCTATCTTTTGGTTAAGGAAGGATCTGATCTTTCAAGGGAAAATGTTTTTATGAGCCAAGGATACTTGGACATGATGTGGGCTAGAATTTTCTTTCTGAAACATGTGTTGGCGTTGGGTTATAGTTTTGTTTTCTCTGATGCGGATATTCTGTGGTTTCGGAATCCGTTCCAATTGTTCGATGACAAGGCTGATTTTCAGATTGCCAGCGATTATTACAATGGCAATCCCCACGACCTATCGAATACCGCCAATGGAGGTTTCAATTTCGTTCGATCCAGCAATAGAAGTATTAAGTTTTATGAATGGTGGTATAAGTCCAGGACAGCCTACCCCAAACTTCACGATCAGGACGTGCTAAA

Ace file of the UniGene sp_v2.0_unigene51116

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotid_trans domain containing protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	uncharacterized protein at4g15970-like	-	-	75%

Source	InterPros	Term	Type	Identity
Sma3	Transposase, IS1	IPR005063	-	-
Sma3	Nucleotide-diphospho-sugar transferase	IPR005069	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLR9

Fln msg: Distance to subject end: 90 aas, your sequence is shorter than subject: 175 - 422

Fln protein: IITTINVAWAEEKSILDLYLQSFRIGKGTQELLNYLLLVAVDQEAFKRCQQIHPHCYLLVKEGSDLSRENVFMSQGYLDMMWARIFFLKHVLALGYSFVFSDADILWFRNPFQLFDDKADFQIASDYYNGNPHDLSNTANGGFNFVRSSNRSIKFYEWWYKSRTAYPKLHDQDVL

Protein Length: 176

Fln nts: GATAATCACAACAATAAACGTAGCTTGGGCAGAAGAAAAGAGTATATTAGATTTGTACCTTCAGAGCTTTCGAATTGGTAAAGGGACACAAGAGTTATTGAATTATCTCCTCCTCGTTGCAGTCGACCAAGAAGCATTCAAGCGTTGCCAGCAGATTCATCCGCACTGCTATCTTTTGGTTAAGGAAGGATCTGATCTTTCAAGGGAAAATGTTTTTATGAGCCAAGGATACTTGGACATGATGTGGGCTAGAATTTTCTTTCTGAAACATGTGTTGGCGTTGGGTTATAGTTTTGTTTTCTCTGATGCGGATATTCTGTGGTTTCGGAATCCGTTCCAATTGTTCGATGACAAGGCTGATTTTCAGATTGCCAGCGATTATTACAATGGCAATCCCCACGACCTATCGAATACCGCCAATGGAGGTTTCAATTTCGTTCGATCCAGCAATAGAAGTATTAAGTTTTATGAATGGTGGTATAAGTCCAGGACAGCCTACCCCAAACTTCACGATCAGGACGTGCTAAA

Fln Alignment:

AllPineV4_c50248___IITTINVAWAEEKSILDLYLQSFRIGKGTQELLNYLLLVAVDQEAFKRCQQIHPHCYLLVKEGSDLSRENVFMSQGYLDMMWARIFFLKHVLALGYSFVFSDADILWFRNPFQLFDDKADFQIASDYYNGNPHDLSNTANGGFNFVRSSNRSIKFYEWWYKSRTAYPKLHDQDVL
B8LLR9_______________IITALNVAWAEPNTMIDLFLESFRVGEGTPELLNNLLIVALDAKAYDRCLEIHPHCYTLKTRGVDFSAEKLYMSDDYLKMMWRRLGFLADILKRGYSFVFSDADIMWLRNPFTRFSPDADIQIASDQYNGSPYDVHNMPNGGYKYVRSNERTVSFYRYWYLSRRLFPGQNEQDVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain