SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51065

Length: 315 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51065
TGGCCTGCAATATCTGGATCTTTCGGTAAATTCATTCACTGGTCGAATTCCTCCAGAGTTGGGAAAGCTTGACAAATTAGAGGGACTGTCTCTGTTTTCCAACAATATTACTGGAAGCATTCCTTCGCAACTTGGAATGCTTAAGAATCTAGAGTCACTCTCTCTATCTAGCAATGCCTATCTTTCTGGGAACATTCCCCCTGAGCTAGGTGGACTCGGGCGCCTGAAAACTCTTTCTCTTTTTCTCACCAATTCAAGCGGAAATATTCCACCTGAATTAGGGCAGCTGTCTAGTTTGGAAATCATGGACATTTA

Ace file of the UniGene sp_v2.0_unigene51065

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Predicted protein n=2 Tax=Hordeum vulgare subsp. vulgare RepID=F2CVD7_HORVD	-	-	2.0e-15	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	leucine rich repeat protein	-	-	5.41051e-18	62%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rapid ALkalinization Factor	IPR008801	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTA1

Fln msg: Distance to subject end: 519 aas, your sequence is shorter than subject: 104 - 946

Fln protein: GLQYLDLSVNSFTGRIPPELGKLDKLEGLSLFSNNITGSIPSQLGMLKNLESLSLSSNAYLSGNIPPELGGLGRLKTLSLFLTNSSGNIPPELGQLSSLEIMDI

Protein Length: 105

Fln nts: TGGCCTGCAATATCTGGATCTTTCGGTAAATTCATTCACTGGTCGAATTCCTCCAGAGTTGGGAAAGCTTGACAAATTAGAGGGACTGTCTCTGTTTTCCAACAATATTACTGGAAGCATTCCTTCGCAACTTGGAATGCTTAAGAATCTAGAGTCACTCTCTCTATCTAGCAATGCCTATCTTTCTGGGAACATTCCCCCTGAGCTAGGTGGACTCGGGCGCCTGAAAACTCTTTCTCTTTTTCTCACCAATTCAAGCGGAAATATTCCACCTGAATTAGGGCAGCTGTCTAGTTTGGAAATCATGGACATTTA

Fln Alignment:

AllPineV4_c50188___LQYLDLSVNSFTGRIPPELGKLDKLEGLSLFSNNITGSIPSQLGMXXXXXXXXXXXXXXXXXXIPPELGGLGRLKTLSLFLTNSSGNIPPELGQLSSLEIM
C0PTA1_______________ISHINLSFNNLSGVIPVDLGSLQKLEWLGLSDNNLSGAIPVDLG-SLQKLQILDLSDNALDNIIPPSLGNCSSLQDLSLSSNRLSGSIPHHLGNLSSLQTL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain