SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene51059

Length: 431 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene51059
GTGTCTTGCGCTGACATTCTTGCCATTGCAGCCAGAGATTCAGTGGTCTTGAGCGGAGGGCTGAAGTGGGATGTCCTGGTGGGAAGAAGGGACTCAAGAAGCGCGAGTTTCAGCGGGGCAAACCACGATATCCCCGCGCCCAACTCCACTCTCCAAACTCTGCTCACAAAGTTCAAACGCCATGGCCTCAACGTCGTAGACTTGGTCGCACTTTCAGGAGGCCACACCATCGGTCAGTCTCGGTGTGTAAGCTTCAGACAGAGGCTCTACATGACTACGCATACTAATTTGGAGAAGGCTTATTCCACTGAATTGAAATCCAGATGCCCCAAATCCGGGGGACACAACATATTGTCCCCATTAGACGTTGTTAGCCCCACTAAATTTGACTACCACTATTTTACCACGGCCTTAGTTTCTGCATTTGCGGA

Ace file of the UniGene sp_v2.0_unigene51059

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Basic peroxidase swpb5 n=3 Tax=Ipomoea batatas RepID=B3SHI2_IPOBA	-	-	5.60519e-45	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	peroxidase 72	-	-	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPA0

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 143 - 344

Fln protein: VSCADILAIAARDSVVLSGGLKWDVLVGRRDSRSASFSGANHDIPAPNSTLQTLLTKFKRHGLNVVDLVALSGGHTIGQSRCVSFRQRLYMTTHTNLEKAYSTELKSRCPKSGGNNILSPLDVVSPTKFDYHYFTTALVSAFA

Protein Length: 144

Fln nts: GTGTCTTGCGCTGACATTCTTGCCATTGCAGCCAGAGATTCAGTGGTCTTGAGCGGAGGGCTGAAGTGGGATGTCCTGGTGGGAAGAAGGGACTCAAGAAGCGCGAGTTTCAGCGGGGCAAACCACGATATCCCCGCGCCCAACTCCACTCTCCAAACTCTGCTCACAAAGTTCAAACGCCATGGCCTCAACGTCGTAGACTTGGTCGCACTTTCAGGAGGCCACACCATCGGTCAGTCTCGGTGTGTAAGCTTCAGACAGAGGCTCTACATGACTACGCATACTAATTTGGAGAAGGCTTATTCCACTGAATTGAAATCCAGATGCCCCAAATCCGGGGGAaACAACATATTGTCCCCATTAGACGTTGTTAGCCCCACTAAATTTGACTACCACTATTTTACCACGGCCTTAGTTTCTGCATTTGCGGA

Fln Alignment:

AllPineV4_c50181___VSCADILAIAARDSVVLSGGLKWDVLVGRRDSRSASFSGANHDIPAPNSTLQTLLTKFKRHGLNVVDLVALSGGHTIGQSRCVSFRQRLYMTTHT-----NLEKAYSTELKSRCPKSGGNNILSPLDVVSPTKFDYHYFTTAL
B8LPA0_______________VSCADILAISVRDSVVLRGGLGWEVLLGRRDSKSASLSGSNNNIPAPNSTLQTLTTKFNLQGLNEVDLVALSGSHTIGLSRCTSFRQRLYNQSGNGQPDFTLDKSYATQLKSGCPKSGGDNNLFPLDFVSPTKFDNYYFKNLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain