SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50948

Length: 284 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50948
AAATGTTATAATGAGACTGTTTTTGGGTTGTTACAAGGGGTTAAAGCCGGGTGAGAAGCTGAGGGTTGTGGATGTGGGTGGAGGACGTGGAACGGCCATAGCTCGGATCGTGGAGGTTCATCCCCACATCCGTGGGATTAACTTTGATCTTCCACATGTGATTGAAACTGCCCCATTGATTTCAGGTGTAGAGCACGTGCGTGGCGACATGTTTGAGAGCATACCATCTGCTGATTTCGTTTTTATCAAGCATGTACTTCATCACTGGGATGATGATCAATGTG

Ace file of the UniGene sp_v2.0_unigene50948

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	O-methyltransferase, family 2; Dimerisation n=1 Tax=Medicago truncatula RepID=Q2HTB3_MEDTR	-	-	3.0e-23	55%
FL-Next	tr=Caffeic acid O-methyltransferase; Pinus taeda (Loblolly pine).	-	-	0.0	52%
Blast2go	caffeic acid 3-o-methyltransferase	-	-	2.23802e-29	72%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q43096

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 94 - 381

Fln protein: NVIMRLFLGCYKGLKPGEKLRVVDVGGGRGTAIARIVEVHPHIRGINFDLPHVIETAPLISGVEHVRGDMFESIPSADFVFIKHVLHHWDDDQC

Protein Length: 95

Fln nts: AAATGTTATAATGAGACTGTTTTTGGGTTGTTACAAGGGGTTAAAGCCGGGTGAGAAGCTGAGGGTTGTGGATGTGGGTGGAGGACGTGGAACGGCCATAGCTCGGATCGTGGAGGTTCATCCCCACATCCGTGGGATTAACTTTGATCTTCCACATGTGATTGAAACTGCCCCATTGATTTCAGGTGTAGAGCACGTGCGTGGCGACATGTTTGAGAGCATACCATCTGCTGATTTCGTTTTTATCAAGCATGTACTTCATCACTGGGATGATGATCAATGTG

Fln Alignment:

AllPineV4_c50049___VIMRLFLGCYKGLKPGEKLRVVDVGGGRGTAIARIVEVHPHIRGINFDLPHVIETAPLISGVEHVRGDMFESIPSADFVFIKHVLHHWDDDQC
Q43096_______________IVMKAILSKYQGFHSLNSL--VDVGGGTGTAVAEIVRAYPFIRGINYDLPHVVATASSLSGVQHVGGDMFETVPTADAIFMKWIMHDWNDEDC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
88		33		66	0.997452
161			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain