SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50846

Length: 557 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50846
CTAACTAAGCTTAAGGTCACCGCTATCAATGTCAACGACTCCGTTACCAAGAGCAAGTTCGACAACTACTACGGTTGCCGCGAGTCCCTCGTCGACGGTATCAAGCGTGCTACCGATGTCATGCTTGCCGGAAAGGTCGCTGTTGTTGCTGGCTACGGCGACGTTGGAAAGGGCTGTGCCGAGTCCTTGAAATCTTACGGTGCCCGTGTTCTCATCACCGAGATCGACCCAATCAACGCCCTCCAAGCTGCCATGGCAGGTTACGAAGTTACTACCATGGAGGATGCCGCTCCTCGCGCCAACATCTTCGTAACCACCACCGGTAACAGGGATATCATCACCGGCAAGCACTTCGAAGTCATGCCTGAAGATGCCATCGTTTCCAACATTGGTCACTTTGATATCGAGATCGACGTCACTTGGTTGAAGCAGAATGCCGCATCGGTCGTCAACGTCAAGCCCCAGGTCGACAGATACACCATGAAAATCCGGCAGGCACATCATCCTTCTGGCCGAAGGTCGTCTTGTCAACCTCGGATGTGCTACCGGACACCCGT

Ace file of the UniGene sp_v2.0_unigene50846

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-adenosyl-L-homocysteine hydrolase [Volvariella volvacea]	-	-	88%
FL-Next	sp=Adenosylhomocysteinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	adenosylhomocysteinase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Adenosylhomocysteinase	IPR000043	-	-
Sma3	S-adenosyl-L-homocysteine hydrolase, NAD binding domain	IPR015878	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUB8

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 185 - 485

Fln protein: LTKLKVTAINVNDSVTKSKFDNYYGCRESLVDGIKRATDVMLAGKVAVVAGYGDVGKGCAESLKSYGARVLITEIDPINALQAAMAGYEVTTMEDAAPRANIFVTTTGNRDIITGKHFEVMPEDAIVSNIGHFDIEIDVTWLKQNAASVVNVKPQVDRYTMKIRQAHHPSGRRSSCQPRMCYRTP

Protein Length: 186

Fln nts: CTAACTAAGCTTAAGGTCACCGCTATCAATGTCAACGACTCCGTTACCAAGAGCAAGTTCGACAACTACTACGGTTGCCGCGAGTCCCTCGTCGACGGTATCAAGCGTGCTACCGATGTCATGCTTGCCGGAAAGGTCGCTGTTGTTGCTGGCTACGGCGACGTTGGAAAGGGCTGTGCCGAGTCCTTGAAATCTTACGGTGCCCGTGTTCTCATCACCGAGATCGACCCAATCAACGCCCTCCAAGCTGCCATGGCAGGTTACGAAGTTACTACCATGGAGGATGCCGCTCCTCGCGCCAACATCTTCGTAACCACCACCGGTAACAGGGATATCATCACCGGCAAGCACTTCGAAGTCATGCCTGAAGATGCCATCGTTTCCAACATTGGTCACTTTGATATCGAGATCGACGTCACTTGGTTGAAGCAGAATGCCGCATCGGTCGTCAACGTCAAGCCCCAGGTCGACAGATACACCATGAAAATCCGGCAGGCACATCATCCTTCTGGCCGAAGGTCGTCTTGTCAACCTCGGATGTGCTACCGGACACCCGT

Fln Alignment:

AllPineV4_c49929___AINVNDSVTKSKFDNYYGCRESLVDGIKRATDVMLAGKVAVVAGYGDVGKGCAESLKSYGARVLITEIDPINALQAAMAGYEVTTMEDAAPRANIFVTTTGNRDIITGKHFEVMPEDAIVSNIGHFDIEIDVTWLKQ-NAASVVNVKPQVDRY
A9NUB8_______________AINVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVCGYGDVGKGCAAAMKVAGARVIVTEIDPICALQALMEGLPVLTLEDVVSTADIFVTTTGNKDIIMLDHMRKMKNNAIVCNIGHFDNEIDIQGLENFPGVKKITIKPQTDRW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain