SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50670

Length: 418 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50670
CGGTTGTGTCAGATCTCTTTACTGAGAGGCATACCATGGGGTTTTTATGTTGGAAGGAGTGGGTGGAGTTTTGGAAGAGTACTACTCCTGCATCCATGAAAAATGGTCAAGAATGGGTAAACGATGGGTCGGTGGATTTCAAGGGCGACCTGCCGATCGAGATCGACATCTGGACAGTGGAAGGCTTCCCTTTTTATTATCGGAGTTGAGTTTAGCGAGAGACTGACCTACTATGGGATTGCCTCCAGTTTGATCATCTACTTGACCACTATGATGCATGAGTAAGAATAAGCCAACTTCCACGCAGCACACCTTTTTCTCGTGGCTCTATATTTGATATCCATCGGCACAGGCGGCCACAAGCCCTCTCTACAATCCTTCGGCGCAGACCAGTTTGATGAGGACGATAAAGCTAGAA

Ace file of the UniGene sp_v2.0_unigene50670

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T755_RICCO	-	-	6.0e-12	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	1.21841e-11	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.21841e-11	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 474 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 54 - 604

Fln protein: MGRWISRATCRSRSTSGQWKASLFIIGVEFSERLTYYGIASSLIIYLTTMMHE*

Protein Length: 55

Fln nts: CGGTTGTGTCAGATCTCTTTACTGAGAGGCATACCATGGGGTTTTTATGTTGGAAGGAGTGGGTGGAGTTTTGGAAGAGTACTACTCCTGCATCCATGAAAAATGGTCAAGAATGGGTAAACG_-_ATGGGTCGGTGGATTTCAAGGGCGACCTGCCGATCGAGATCGACATCTGGACAGTGGAAGGCTTCCCTTTTTATTATCGGAGTTGAGTTTAGCGAGAGACTGACCTACTATGGGATTGCCTCCAGTTTGATCATCTACTTGACCACTATGATGCATGAGTAAGAATAAGCCAACTTCCACGCAGCACACCTTTTTCTCGTGGCTCTATATTTGATATCCATCGGCACAGGCGGCCACAAGCCCTCTCTACAATCCTTCGGCGCAGACCAGTTTGATGAGGACGATAAAGCTAGAA

Fln Alignment:

AllPineV4_c49722___RSTSGQWKASLFIIGVEFSERLTYYGIASSLIIYLTTMMHE
A9NWU3_______________KSLTGGWTASLLIIGIEIAERLAYYGIASNLVTYLTNIMHQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain