SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50633

Length: 352 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene50633
TTTGTCAGTTATCTGTATCGTCGCCTTGTCTCACAGGGATTGAAAGTCTTTCTAGATCAGGAGGAAATGCAAAGGGGGGAGTCTTTGAATTCTCAAATAGAAACCGCTATTAGAACCGCCTCCGTCCATGTGGCGGTTTTCTCTCCTGGATATGCAGACTCTATTTGGTGTCTGAATGAACTCCTCCAAATGCTGGAATCGAGAAAGACGATTATCCCTGTATTTTATGGTATCAAGCCCTCTGAGCTTAGGTGGACGCAGGGCAATCGTGGAAAGTATGCTGAAGCCCTACAATCACTGGCAAATAAGACGACTTATGATGATCAACCTCTCCAAAAGAAATTGCGATACG

Ace file of the UniGene sp_v2.0_unigene50633 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	2.0e-27	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	tir nbs lrr disease resistance protein	-	-	1.53516e-35	68%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Distance to subject end: 412 aas, your sequence is shorter than subject: 117 - 579

Fln protein: FVSYLYRRLVSQGLKVFLDQEEMQRGESLNSQIETAIRTASVHVAVFSPGYADSIWCLNELLQMLESRKTIIPVFYGIKPSELRWTQGNRGKYAEALQSLANKTTYDDQPLQKKLRY

Protein Length: 118

Fln nts: TTTGTCAGTTATCTGTATCGTCGCCTTGTCTCACAGGGATTGAAAGTCTTTCTAGATCAGGAGGAAATGCAAAGGGGGGAGTCTTTGAATTCTCAAATAGAAACCGCTATTAGAACCGCCTCCGTCCATGTGGCGGTTTTCTCTCCTGGATATGCAGACTCTATTTGGTGTCTGAATGAACTCCTCCAAATGCTGGAATCGAGAAAGACGATTATCCCTGTATTTTATGGTATCAAGCCCTCTGAGCTTAGGTGGACGCAGGGCAATCGTGGAAAGTATGCTGAAGCCCTACAATCACTGGCAAATAAGACGACTTATGATGATCAACCTCTCCAAAAGAAATTGCGATACG

Fln Alignment:

AllPineV4_c49677___SYLYRRLVSQGLKVFLDQEEMQRGESLNSQIETAIRTASVHVAVFSPGYADSIWCLNELLQMLESRKTIIPVFYGIKPSELRWTQGNRGK----YAEALQSLANKTTYDDQ
B8LRB4_______________SHLYHRLKAYGLGVFLDQQELERGENMTPQIEGAIRTASIHIAIFSPTYAESSWCLKELVMMLESGSTIIPVFYHVRPCELRWTRGGNGDGDGVYARALCTLEKKRTFDQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain