SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50602

Length: 439 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50602
GTATGGAATGCAAATTTTGATCGACTCTTTATCGATCTTGAACGGGATTTTTCAACATTTCTCAGTGTTCAAGGGATTGCATCGGCGGCACCACTGCAATCGGAGGCGTTGCTTCAGCCAGTACCACAGTCGGGCTTTGTGGGATTGGGGATTAAATCCTGCCAGATGCGGCTGCAGACATGGCTTGACGACGAAGATCAGCGATTTCGCATAATTGCAGTTTACGGCATGGGCGGTATCGGGAAAACATCTTTGCTGAAAACCATCTACAACGACTACAAGAAAGGTAAGTTGTTCGAAGCCGTAATTTGGACAGTTGTTTCTCAAAATTATAGCATTTCAGCCTTGCAGGCTGAGATTGCAAAGCAAATCAATCTAAATCTTGGGAGCAGCTCTAGTGTTGAGTTAGCAAAGATGGAGCTCTCTGCATCTCTCAGGG

Ace file of the UniGene sp_v2.0_unigene50602

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BED finger-nbs-lrr resistance protein n=1 Tax=Populus trichocarpa RepID=B9N9S8_POPTR	-	-	1.0e-11	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	bed finger-nbs-lrr resistance protein	-	-	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS43

Fln msg: Distance to subject end: 667 aas, your sequence is shorter than subject: 146 - 932

Fln protein: VWNANFDRLFIDLERDFSTFLSVQGIASAAPLQSEALLQPVPQSGFVGLGIKSCQMRLQTWLDDEDQRFRIIAVYGMGGIGKTSLLKTIYNDYKKGKLFEAVIWTVVSQNYSISALQAEIAKQINLNLGSSSSVELAKMELSASLR

Protein Length: 147

Fln nts: GTATGGAATGCAAATTTTGATCGACTCTTTATCGATCTTGAACGGGATTTTTCAACATTTCTCAGTGTTCAAGGGATTGCATCGGCGGCACCACTGCAATCGGAGGCGTTGCTTCAGCCAGTACCACAGTCGGGCTTTGTGGGATTGGGGATTAAATCCTGCCAGATGCGGCTGCAGACATGGCTTGACGACGAAGATCAGCGATTTCGCATAATTGCAGTTTACGGCATGGGCGGTATCGGGAAAACATCTTTGCTGAAAACCATCTACAACGACTACAAGAAAGGTAAGTTGTTCGAAGCCGTAATTTGGACAGTTGTTTCTCAAAATTATAGCATTTCAGCCTTGCAGGCTGAGATTGCAAAGCAAATCAATCTAAATCTTGGGAGCAGCTCTAGTGTTGAGTTAGCAAAGATGGAGCTCTCTGCATCTCTCAGGG

Fln Alignment:

AllPineV4_c49636___WNANFDRLFIDLERDFSTFLSVQGIASAAPLQSEALLQPVPQSGFVGLGIKSCQMRLQTWLDDEDQRFRIIAVYGMGGIGKTSLLKTIYNDYKKGKLFEAVIWTVVSQNYSISALQAEIAKQINLNLG-------SSSSVELAKMELSASLR
B8LS43_______________WNANFDRLYIDLERDLSIIGNAERTASSAPLQSEAMLQPVPELGFVGSGIKSGKMQLQRWLDNEDQQFRRIGVYGMGGIGKTSLLKTVYNAYKKGKLFEAVIWTSVSQIYNIADLQSNIAEEINLKLGSTTSNPESSSAADMRKRKLSACLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain