SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene50592

Length: 527 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene50592
TACCGATGAAATGGTGCTGGATGAAGATGATGATTACGAGGATTCTTATGGGATAGAGGAACCAGCTGAACCTGAGGTTGGAGACGGGGAAGAGGGTGGAGGAGTGTCACTTGGGTCCACTTATTGGGGAAGCAAAGCTTTGACTATTGCACAGGAGGTCGTTCTTCCTTTCAAGGATGAGCTGGGAATTTTTGCCTTCAAAGCTGCAAGTAATGGACATGTTTCCGTACGACTCGACAAGCTCTCAAACAAGTATGGTTCCCCCAGCATAGATGATATCAGGACATTTTCTTCCCTTTATTTAGAGCAACTGGATGAAGCTAAGCAAGCTGGACTGTTGCCTGATAATTTAGCTTTAGAGGTCTCATCTCCGGGTGCAGAAAGATTGTTCGTGTGCCTCAAGACTTGGAACGTTTCAAGGACTTGCCTATGTATGTTAGATATTTGGAGGAGACTGCTGAAAGTGGAAGTAAAGAACAAGATGGCATTTTCCAGCTAGACTGTGTTGAAATGGAATTGGGGTTCGC

Ace file of the UniGene sp_v2.0_unigene50592

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF150 domain containing protein	-	-	5.0e-06	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	uncharacterized protein	-	-	4.1611e-31	70%

Source	InterPros	Term	Type	Identity
Sma3	Copper amine oxidase	IPR000269	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Ribosome maturation factor RimP	IPR003728	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE62

Fln msg: your sequence is shorter than subject: 166 - 192

Fln protein: TDEMVLDEDDDYEDSYGIEEPAEPEVGDGEEGGGVSLGSTYWGSKALTIAQEVVLPFKDELGIFAFKAASNGHVSVRLDKLSNKYGSPSIDDIRTFSSLYLEQLDEAKQAGLLPDNLALEVSSPGAERLFVCLKTWNVSRTCLCMLDIWRRLLKVEVKNKMAFSS*

Protein Length: 167

Fln nts: TACCGATGAAATGGTGCTGGATGAAGATGATGATTACGAGGATTCTTATGGGATAGAGGAACCAGCTGAACCTGAGGTTGGAGACGGGGAAGAGGGTGGAGGAGTGTCACTTGGGTCCACTTATTGGGGAAGCAAAGCTTTGACTATTGCACAGGAGGTCGTTCTTCCTTTCAAGGATGAGCTGGGAATTTTTGCCTTCAAAGCTGCAAGTAATGGACATGTTTCCGTACGACTCGACAAGCTCTCAAACAAGTATGGTTCCCCCAGCATAGATGATATCAGGACATTTTCTTCCCTTTATTTAGAGCAACTGGATGAAGCTAAGCAAGCTGGACTGTTGCCTGATAATTTAGCTTTAGAGGTCTCATCTCCGGGTGCAGAAAGATTGTTCGTGTGCCTCAAGACTTGGAACGTTTCAAGGACTTGCCTATGTATGTTAGATATTTGGAGGAGACTGCTGAAAGTGGAAGTAAAGAACAAGATGGCATTTTCCAGCTAG___ACTGTGTTGAAATGGAATTGGGGTTCGC

Fln Alignment:

AllPineV4_c49626___TDEMVLDEDDDYEDSYGIXXXXXXXXXXXXXXXXXXXXXTYWGSKALTIAQEVVLPFKDELGIFAFKAASNGHVSVRLDKLSN
D5AE62_______________TDEMVLDEDDYSEDSYGTEEPAEPQVGDGEEGGGVSLGSTYWGSKALTIAQEVIIPFKDELEIFSFKAANNGHISVRLDKLSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain